Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1364 and Dsui_1365 are separated by 15 nucleotides Dsui_1365 and Dsui_1366 are separated by 36 nucleotides Dsui_1366 and Dsui_1367 are separated by 120 nucleotides Dsui_1367 and Dsui_1368 are separated by 8 nucleotides
Dsui_1364: Dsui_1364 - serine phosphatase RsbU, regulator of sigma subunit, at 1,417,465 to 1,419,462
_1364
Dsui_1365: Dsui_1365 - hypothetical protein, at 1,419,478 to 1,419,693
_1365
Dsui_1366: Dsui_1366 - glutaminyl-tRNA synthetase, at 1,419,730 to 1,421,511
_1366
Dsui_1367: Dsui_1367 - crcB protein, at 1,421,632 to 1,422,021
_1367
Dsui_1368: Dsui_1368 - hypothetical protein, at 1,422,030 to 1,422,866
_1368
Position (kb)
1419
1420
1421
1422 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1418.780 kb on - strand, within Dsui_1364 at 1418.816 kb on - strand, within Dsui_1364 at 1418.906 kb on + strand, within Dsui_1364 at 1418.906 kb on + strand at 1418.978 kb on + strand, within Dsui_1364 at 1419.049 kb on - strand, within Dsui_1364 at 1419.127 kb on - strand, within Dsui_1364 at 1419.159 kb on - strand, within Dsui_1364 at 1419.179 kb on + strand, within Dsui_1364 at 1419.289 kb on + strand at 1419.310 kb on + strand at 1419.340 kb on + strand at 1419.497 kb on - strand at 1419.605 kb on + strand at 1419.673 kb on + strand at 1419.676 kb on - strand at 1419.727 kb on + strand at 1419.751 kb on - strand at 1419.751 kb on - strand at 1421.588 kb on - strand at 1421.609 kb on + strand at 1421.609 kb on + strand at 1421.609 kb on + strand at 1421.609 kb on + strand at 1421.609 kb on + strand at 1421.617 kb on - strand at 1421.617 kb on - strand at 1421.624 kb on + strand at 1421.624 kb on - strand at 1421.632 kb on - strand at 1421.709 kb on + strand, within Dsui_1367 at 1421.721 kb on + strand, within Dsui_1367 at 1421.724 kb on - strand, within Dsui_1367 at 1421.724 kb on - strand at 1421.780 kb on + strand, within Dsui_1367 at 1421.814 kb on + strand, within Dsui_1367 at 1421.815 kb on - strand at 1421.826 kb on + strand, within Dsui_1367 at 1421.947 kb on - strand, within Dsui_1367 at 1422.015 kb on + strand at 1422.092 kb on - strand at 1422.103 kb on - strand at 1422.110 kb on - strand at 1422.152 kb on + strand, within Dsui_1368 at 1422.171 kb on - strand at 1422.175 kb on - strand at 1422.191 kb on - strand, within Dsui_1368 at 1422.217 kb on - strand, within Dsui_1368 at 1422.225 kb on - strand, within Dsui_1368 at 1422.239 kb on + strand, within Dsui_1368 at 1422.247 kb on - strand, within Dsui_1368 at 1422.350 kb on - strand at 1422.453 kb on + strand, within Dsui_1368 at 1422.466 kb on - strand, within Dsui_1368
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 1,418,780 - Dsui_1364 0.66 -0.7 1,418,816 - Dsui_1364 0.68 -0.8 1,418,906 + Dsui_1364 0.72 +1.7 1,418,906 + +0.3 1,418,978 + Dsui_1364 0.76 -1.2 1,419,049 - Dsui_1364 0.79 -0.6 1,419,127 - Dsui_1364 0.83 -0.6 1,419,159 - Dsui_1364 0.85 -0.7 1,419,179 + Dsui_1364 0.86 -1.0 1,419,289 + +0.3 1,419,310 + -1.7 1,419,340 + +0.3 1,419,497 - -0.1 1,419,605 + -0.7 1,419,673 + -0.7 1,419,676 - -1.3 1,419,727 + -2.0 1,419,751 - -0.4 1,419,751 - +0.1 1,421,588 - +0.3 1,421,609 + -1.7 1,421,609 + -0.9 1,421,609 + -0.9 1,421,609 + +1.3 1,421,609 + -3.0 1,421,617 - +0.3 1,421,617 - +0.3 1,421,624 + -1.4 1,421,624 - -1.7 1,421,632 - -1.2 1,421,709 + Dsui_1367 0.20 -0.7 1,421,721 + Dsui_1367 0.23 -0.2 1,421,724 - Dsui_1367 0.24 -2.0 1,421,724 - +0.3 1,421,780 + Dsui_1367 0.38 -0.6 1,421,814 + Dsui_1367 0.47 -0.5 1,421,815 - -0.7 1,421,826 + Dsui_1367 0.50 +1.7 1,421,947 - Dsui_1367 0.81 +0.3 1,422,015 + -0.7 1,422,092 - -0.7 1,422,103 - +0.3 1,422,110 - -1.7 1,422,152 + Dsui_1368 0.15 -2.5 1,422,171 - +0.3 1,422,175 - -0.7 1,422,191 - Dsui_1368 0.19 +0.3 1,422,217 - Dsui_1368 0.22 +0.3 1,422,225 - Dsui_1368 0.23 +0.3 1,422,239 + Dsui_1368 0.25 -2.0 1,422,247 - Dsui_1368 0.26 -1.2 1,422,350 - +0.3 1,422,453 + Dsui_1368 0.51 +0.3 1,422,466 - Dsui_1368 0.52 -1.7
Or see this region's nucleotide sequence