Strain Fitness in Dechlorosoma suillum PS around Dsui_1266

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1265 and Dsui_1266 are separated by 45 nucleotidesDsui_1266 and Dsui_1267 are separated by 15 nucleotides Dsui_1265: Dsui_1265 - glycine/serine hydroxymethyltransferase, at 1,328,632 to 1,329,882 _1265 Dsui_1266: Dsui_1266 - transcriptional regulator NrdR, at 1,329,928 to 1,330,383 _1266 Dsui_1267: Dsui_1267 - riboflavin biosynthesis protein RibD, at 1,330,399 to 1,331,496 _1267 Position (kb) 1329 1330 1331Strain fitness (log2 ratio) -2 -1 0 1at 1329.935 kb on + strandat 1330.011 kb on + strand, within Dsui_1266at 1330.022 kb on + strand, within Dsui_1266at 1330.055 kb on - strand, within Dsui_1266at 1330.089 kb on - strandat 1330.093 kb on + strand, within Dsui_1266at 1330.350 kb on + strandat 1330.388 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
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1,329,935 + -1.0
1,330,011 + Dsui_1266 0.18 -0.5
1,330,022 + Dsui_1266 0.21 -2.6
1,330,055 - Dsui_1266 0.28 -1.3
1,330,089 - +0.3
1,330,093 + Dsui_1266 0.36 -0.2
1,330,350 + -0.2
1,330,388 + -0.1

Or see this region's nucleotide sequence