Strain Fitness in Dechlorosoma suillum PS around Dsui_1132

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1130 and Dsui_1131 overlap by 4 nucleotidesDsui_1131 and Dsui_1132 are separated by 13 nucleotidesDsui_1132 and Dsui_1133 are separated by 61 nucleotidesDsui_1133 and Dsui_1134 are separated by 47 nucleotides Dsui_1130: Dsui_1130 - heavy metal efflux pump, cobalt-zinc-cadmium, at 1,182,125 to 1,185,283 _1130 Dsui_1131: Dsui_1131 - hypothetical protein, at 1,185,280 to 1,186,023 _1131 Dsui_1132: Dsui_1132 - hypothetical protein, at 1,186,037 to 1,186,678 _1132 Dsui_1133: Dsui_1133 - hypothetical protein, at 1,186,740 to 1,187,015 _1133 Dsui_1134: Dsui_1134 - arabinose efflux permease family protein, at 1,187,063 to 1,188,400 _1134 Position (kb) 1186 1187Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1185.116 kb on + strandat 1185.177 kb on - strandat 1185.217 kb on - strandat 1185.275 kb on + strandat 1185.362 kb on + strand, within Dsui_1131at 1185.372 kb on + strand, within Dsui_1131at 1185.398 kb on - strand, within Dsui_1131at 1185.424 kb on + strand, within Dsui_1131at 1185.580 kb on - strand, within Dsui_1131at 1185.593 kb on + strand, within Dsui_1131at 1185.599 kb on + strand, within Dsui_1131at 1185.642 kb on + strand, within Dsui_1131at 1185.688 kb on + strand, within Dsui_1131at 1185.698 kb on + strand, within Dsui_1131at 1185.732 kb on + strand, within Dsui_1131at 1185.813 kb on + strand, within Dsui_1131at 1185.824 kb on + strand, within Dsui_1131at 1185.845 kb on + strand, within Dsui_1131at 1185.928 kb on + strand, within Dsui_1131at 1185.951 kb on - strandat 1185.992 kb on + strandat 1186.030 kb on - strandat 1186.034 kb on + strandat 1186.047 kb on - strandat 1186.071 kb on - strandat 1186.081 kb on + strandat 1186.081 kb on + strandat 1186.081 kb on + strandat 1186.089 kb on - strandat 1186.099 kb on + strandat 1186.197 kb on + strand, within Dsui_1132at 1186.197 kb on + strand, within Dsui_1132at 1186.205 kb on - strand, within Dsui_1132at 1186.205 kb on - strand, within Dsui_1132at 1186.242 kb on + strand, within Dsui_1132at 1186.266 kb on + strand, within Dsui_1132at 1186.374 kb on + strand, within Dsui_1132at 1186.380 kb on + strand, within Dsui_1132at 1186.411 kb on + strand, within Dsui_1132at 1186.412 kb on - strand, within Dsui_1132at 1186.431 kb on - strand, within Dsui_1132at 1186.489 kb on - strand, within Dsui_1132at 1186.491 kb on + strand, within Dsui_1132at 1186.549 kb on - strand, within Dsui_1132at 1186.549 kb on - strand, within Dsui_1132at 1186.549 kb on - strand, within Dsui_1132at 1186.584 kb on - strand, within Dsui_1132at 1186.609 kb on + strand, within Dsui_1132at 1186.631 kb on + strandat 1186.674 kb on - strandat 1186.737 kb on + strandat 1186.742 kb on - strandat 1186.747 kb on - strandat 1186.833 kb on + strand, within Dsui_1133at 1186.833 kb on + strand, within Dsui_1133at 1186.886 kb on - strand, within Dsui_1133at 1186.935 kb on + strand, within Dsui_1133at 1186.965 kb on + strand, within Dsui_1133at 1187.018 kb on + strandat 1187.024 kb on - strandat 1187.039 kb on + strandat 1187.096 kb on - strandat 1187.146 kb on - strandat 1187.206 kb on - strand, within Dsui_1134at 1187.281 kb on + strand, within Dsui_1134at 1187.301 kb on + strand, within Dsui_1134at 1187.314 kb on - strand, within Dsui_1134at 1187.391 kb on - strand, within Dsui_1134at 1187.393 kb on + strand, within Dsui_1134at 1187.393 kb on + strand, within Dsui_1134at 1187.403 kb on + strand, within Dsui_1134at 1187.412 kb on + strand, within Dsui_1134at 1187.575 kb on - strand, within Dsui_1134at 1187.672 kb on + strand, within Dsui_1134

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
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1,185,116 + +0.4
1,185,177 - +0.4
1,185,217 - -2.2
1,185,275 + -0.2
1,185,362 + Dsui_1131 0.11 -0.7
1,185,372 + Dsui_1131 0.12 +1.4
1,185,398 - Dsui_1131 0.16 -0.6
1,185,424 + Dsui_1131 0.19 -2.4
1,185,580 - Dsui_1131 0.40 -0.6
1,185,593 + Dsui_1131 0.42 -0.9
1,185,599 + Dsui_1131 0.43 +0.4
1,185,642 + Dsui_1131 0.49 +1.0
1,185,688 + Dsui_1131 0.55 +1.4
1,185,698 + Dsui_1131 0.56 -3.2
1,185,732 + Dsui_1131 0.61 -0.2
1,185,813 + Dsui_1131 0.72 +1.0
1,185,824 + Dsui_1131 0.73 -2.4
1,185,845 + Dsui_1131 0.76 +0.0
1,185,928 + Dsui_1131 0.87 +2.0
1,185,951 - -1.2
1,185,992 + -1.2
1,186,030 - +0.4
1,186,034 + -0.2
1,186,047 - +0.4
1,186,071 - +0.4
1,186,081 + -0.1
1,186,081 + -2.4
1,186,081 + +1.4
1,186,089 - -1.6
1,186,099 + +0.1
1,186,197 + Dsui_1132 0.25 +0.4
1,186,197 + Dsui_1132 0.25 -1.1
1,186,205 - Dsui_1132 0.26 -1.9
1,186,205 - Dsui_1132 0.26 +0.4
1,186,242 + Dsui_1132 0.32 +0.4
1,186,266 + Dsui_1132 0.36 -1.9
1,186,374 + Dsui_1132 0.52 -1.9
1,186,380 + Dsui_1132 0.53 -0.6
1,186,411 + Dsui_1132 0.58 +0.4
1,186,412 - Dsui_1132 0.58 -2.9
1,186,431 - Dsui_1132 0.61 +0.4
1,186,489 - Dsui_1132 0.70 -0.6
1,186,491 + Dsui_1132 0.71 -3.0
1,186,549 - Dsui_1132 0.80 -1.9
1,186,549 - Dsui_1132 0.80 +0.4
1,186,549 - Dsui_1132 0.80 -0.6
1,186,584 - Dsui_1132 0.85 -0.6
1,186,609 + Dsui_1132 0.89 -1.1
1,186,631 + +1.2
1,186,674 - +0.4
1,186,737 + +0.4
1,186,742 - -1.9
1,186,747 - +0.4
1,186,833 + Dsui_1133 0.34 +0.4
1,186,833 + Dsui_1133 0.34 -0.7
1,186,886 - Dsui_1133 0.53 -0.6
1,186,935 + Dsui_1133 0.71 -1.9
1,186,965 + Dsui_1133 0.82 -0.6
1,187,018 + -2.7
1,187,024 - +0.4
1,187,039 + -2.1
1,187,096 - +0.4
1,187,146 - -2.1
1,187,206 - Dsui_1134 0.11 +0.4
1,187,281 + Dsui_1134 0.16 -0.6
1,187,301 + Dsui_1134 0.18 -0.6
1,187,314 - Dsui_1134 0.19 -0.6
1,187,391 - Dsui_1134 0.25 -0.6
1,187,393 + Dsui_1134 0.25 -1.2
1,187,393 + Dsui_1134 0.25 -2.0
1,187,403 + Dsui_1134 0.25 +0.7
1,187,412 + Dsui_1134 0.26 -0.2
1,187,575 - Dsui_1134 0.38 +0.4
1,187,672 + Dsui_1134 0.46 +0.9

Or see this region's nucleotide sequence