Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1127 and Dsui_1128 are separated by 630 nucleotides Dsui_1128 and Dsui_1129 overlap by 4 nucleotides
Dsui_1127: Dsui_1127 - site-specific recombinase XerD, at 1,177,835 to 1,179,004
_1127
Dsui_1128: Dsui_1128 - outer membrane protein, at 1,179,635 to 1,180,885
_1128
Dsui_1129: Dsui_1129 - acetyl/propionyl-CoA carboxylase, alpha subunit, at 1,180,882 to 1,182,114
_1129
Position (kb)
1179
1180
1181 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1178.711 kb on + strand, within Dsui_1127 at 1178.711 kb on + strand, within Dsui_1127 at 1178.711 kb on + strand, within Dsui_1127 at 1178.711 kb on + strand, within Dsui_1127 at 1178.711 kb on + strand, within Dsui_1127 at 1178.719 kb on - strand, within Dsui_1127 at 1178.719 kb on - strand, within Dsui_1127 at 1178.719 kb on - strand, within Dsui_1127 at 1178.719 kb on - strand, within Dsui_1127 at 1178.719 kb on - strand, within Dsui_1127 at 1178.721 kb on + strand, within Dsui_1127 at 1178.764 kb on + strand, within Dsui_1127 at 1178.797 kb on + strand, within Dsui_1127 at 1178.813 kb on + strand, within Dsui_1127 at 1178.813 kb on + strand, within Dsui_1127 at 1178.813 kb on + strand, within Dsui_1127 at 1178.813 kb on + strand, within Dsui_1127 at 1178.813 kb on + strand, within Dsui_1127 at 1178.813 kb on + strand, within Dsui_1127 at 1178.813 kb on + strand, within Dsui_1127 at 1178.813 kb on + strand, within Dsui_1127 at 1178.813 kb on + strand, within Dsui_1127 at 1178.813 kb on + strand, within Dsui_1127 at 1178.813 kb on + strand, within Dsui_1127 at 1178.813 kb on + strand, within Dsui_1127 at 1178.813 kb on + strand, within Dsui_1127 at 1178.813 kb on + strand, within Dsui_1127 at 1178.818 kb on + strand, within Dsui_1127 at 1178.821 kb on - strand, within Dsui_1127 at 1178.821 kb on - strand, within Dsui_1127 at 1178.821 kb on - strand, within Dsui_1127 at 1178.821 kb on - strand, within Dsui_1127 at 1178.821 kb on - strand, within Dsui_1127 at 1178.821 kb on - strand, within Dsui_1127 at 1178.821 kb on - strand, within Dsui_1127 at 1178.821 kb on - strand, within Dsui_1127 at 1178.821 kb on - strand, within Dsui_1127 at 1178.821 kb on - strand, within Dsui_1127 at 1178.821 kb on - strand, within Dsui_1127 at 1178.821 kb on - strand, within Dsui_1127 at 1178.823 kb on + strand, within Dsui_1127 at 1178.831 kb on - strand, within Dsui_1127 at 1178.836 kb on - strand, within Dsui_1127 at 1178.837 kb on + strand, within Dsui_1127 at 1178.845 kb on - strand, within Dsui_1127 at 1178.876 kb on + strand, within Dsui_1127 at 1178.910 kb on + strand at 1178.910 kb on + strand at 1178.910 kb on + strand at 1178.910 kb on + strand at 1178.910 kb on + strand at 1178.910 kb on + strand at 1178.918 kb on - strand at 1178.918 kb on - strand at 1178.918 kb on - strand at 1178.918 kb on - strand at 1178.929 kb on + strand at 1178.936 kb on - strand at 1178.961 kb on + strand at 1178.969 kb on - strand at 1178.998 kb on + strand at 1179.006 kb on - strand at 1179.008 kb on + strand at 1179.051 kb on - strand at 1179.111 kb on - strand at 1179.125 kb on + strand at 1179.183 kb on - strand at 1179.222 kb on - strand at 1179.325 kb on + strand at 1179.499 kb on + strand at 1179.499 kb on + strand at 1179.505 kb on + strand at 1179.512 kb on - strand at 1179.522 kb on - strand at 1179.628 kb on - strand at 1179.789 kb on - strand, within Dsui_1128 at 1179.789 kb on - strand, within Dsui_1128 at 1179.797 kb on - strand, within Dsui_1128 at 1179.810 kb on + strand, within Dsui_1128 at 1179.816 kb on - strand, within Dsui_1128 at 1179.874 kb on - strand, within Dsui_1128 at 1179.921 kb on + strand, within Dsui_1128 at 1179.921 kb on + strand, within Dsui_1128 at 1179.991 kb on - strand, within Dsui_1128 at 1180.002 kb on - strand, within Dsui_1128 at 1180.016 kb on - strand, within Dsui_1128 at 1180.044 kb on + strand, within Dsui_1128 at 1180.207 kb on + strand, within Dsui_1128 at 1180.215 kb on - strand, within Dsui_1128 at 1180.215 kb on - strand, within Dsui_1128 at 1180.239 kb on + strand, within Dsui_1128 at 1180.247 kb on - strand, within Dsui_1128 at 1180.247 kb on - strand, within Dsui_1128 at 1180.251 kb on - strand, within Dsui_1128 at 1180.252 kb on - strand, within Dsui_1128 at 1180.257 kb on + strand, within Dsui_1128 at 1180.320 kb on - strand, within Dsui_1128 at 1180.335 kb on + strand, within Dsui_1128 at 1180.336 kb on - strand, within Dsui_1128 at 1180.359 kb on + strand, within Dsui_1128 at 1180.359 kb on + strand, within Dsui_1128 at 1180.367 kb on - strand, within Dsui_1128 at 1180.436 kb on - strand, within Dsui_1128 at 1180.475 kb on - strand, within Dsui_1128 at 1180.476 kb on - strand, within Dsui_1128 at 1180.562 kb on + strand, within Dsui_1128 at 1180.575 kb on + strand, within Dsui_1128 at 1180.622 kb on - strand, within Dsui_1128 at 1180.624 kb on + strand, within Dsui_1128 at 1180.659 kb on - strand, within Dsui_1128 at 1180.659 kb on - strand, within Dsui_1128 at 1180.659 kb on - strand, within Dsui_1128 at 1180.671 kb on - strand, within Dsui_1128 at 1180.672 kb on - strand, within Dsui_1128 at 1180.690 kb on + strand, within Dsui_1128 at 1180.720 kb on - strand, within Dsui_1128 at 1180.720 kb on - strand, within Dsui_1128 at 1180.721 kb on - strand, within Dsui_1128 at 1180.737 kb on - strand, within Dsui_1128 at 1180.852 kb on + strand at 1180.874 kb on - strand at 1180.875 kb on - strand at 1181.138 kb on + strand, within Dsui_1129 at 1181.216 kb on + strand, within Dsui_1129 at 1181.302 kb on + strand, within Dsui_1129 at 1181.357 kb on - strand, within Dsui_1129 at 1181.413 kb on - strand, within Dsui_1129 at 1181.541 kb on + strand, within Dsui_1129 at 1181.547 kb on + strand, within Dsui_1129 at 1181.552 kb on + strand, within Dsui_1129 at 1181.621 kb on + strand, within Dsui_1129
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 1,178,711 + Dsui_1127 0.75 +0.4 1,178,711 + Dsui_1127 0.75 +0.4 1,178,711 + Dsui_1127 0.75 -1.9 1,178,711 + Dsui_1127 0.75 +0.4 1,178,711 + Dsui_1127 0.75 -2.4 1,178,719 - Dsui_1127 0.76 +0.1 1,178,719 - Dsui_1127 0.76 -1.2 1,178,719 - Dsui_1127 0.76 -0.5 1,178,719 - Dsui_1127 0.76 -0.2 1,178,719 - Dsui_1127 0.76 -0.5 1,178,721 + Dsui_1127 0.76 +0.4 1,178,764 + Dsui_1127 0.79 -0.6 1,178,797 + Dsui_1127 0.82 -1.2 1,178,813 + Dsui_1127 0.84 -1.6 1,178,813 + Dsui_1127 0.84 +0.4 1,178,813 + Dsui_1127 0.84 +0.4 1,178,813 + Dsui_1127 0.84 +0.4 1,178,813 + Dsui_1127 0.84 -0.6 1,178,813 + Dsui_1127 0.84 -2.7 1,178,813 + Dsui_1127 0.84 +0.4 1,178,813 + Dsui_1127 0.84 +0.4 1,178,813 + Dsui_1127 0.84 +0.4 1,178,813 + Dsui_1127 0.84 +0.4 1,178,813 + Dsui_1127 0.84 +0.4 1,178,813 + Dsui_1127 0.84 -0.6 1,178,813 + Dsui_1127 0.84 -2.2 1,178,813 + Dsui_1127 0.84 -1.2 1,178,818 + Dsui_1127 0.84 +0.4 1,178,821 - Dsui_1127 0.84 -0.6 1,178,821 - Dsui_1127 0.84 -1.6 1,178,821 - Dsui_1127 0.84 -1.6 1,178,821 - Dsui_1127 0.84 -1.6 1,178,821 - Dsui_1127 0.84 -1.6 1,178,821 - Dsui_1127 0.84 -1.2 1,178,821 - Dsui_1127 0.84 -1.2 1,178,821 - Dsui_1127 0.84 +0.4 1,178,821 - Dsui_1127 0.84 -0.6 1,178,821 - Dsui_1127 0.84 +0.4 1,178,821 - Dsui_1127 0.84 -0.6 1,178,821 - Dsui_1127 0.84 +0.4 1,178,823 + Dsui_1127 0.84 -1.2 1,178,831 - Dsui_1127 0.85 +0.4 1,178,836 - Dsui_1127 0.86 -1.9 1,178,837 + Dsui_1127 0.86 -1.9 1,178,845 - Dsui_1127 0.86 +0.4 1,178,876 + Dsui_1127 0.89 -1.9 1,178,910 + -1.2 1,178,910 + +0.4 1,178,910 + +0.4 1,178,910 + -1.6 1,178,910 + +0.4 1,178,910 + -0.6 1,178,918 - +0.4 1,178,918 - +0.4 1,178,918 - -1.9 1,178,918 - -0.6 1,178,929 + -0.6 1,178,936 - +0.4 1,178,961 + +0.4 1,178,969 - -0.6 1,178,998 + +0.4 1,179,006 - +0.4 1,179,008 + +0.4 1,179,051 - +0.4 1,179,111 - -1.2 1,179,125 + -0.6 1,179,183 - +0.4 1,179,222 - +0.4 1,179,325 + +0.0 1,179,499 + -0.0 1,179,499 + -0.6 1,179,505 + +0.1 1,179,512 - -1.2 1,179,522 - +0.4 1,179,628 - +0.4 1,179,789 - Dsui_1128 0.12 +0.4 1,179,789 - Dsui_1128 0.12 -1.2 1,179,797 - Dsui_1128 0.13 -1.9 1,179,810 + Dsui_1128 0.14 +0.4 1,179,816 - Dsui_1128 0.14 -1.9 1,179,874 - Dsui_1128 0.19 -0.6 1,179,921 + Dsui_1128 0.23 +0.0 1,179,921 + Dsui_1128 0.23 +0.4 1,179,991 - Dsui_1128 0.28 -1.6 1,180,002 - Dsui_1128 0.29 -0.6 1,180,016 - Dsui_1128 0.30 -1.2 1,180,044 + Dsui_1128 0.33 -2.9 1,180,207 + Dsui_1128 0.46 -0.6 1,180,215 - Dsui_1128 0.46 +0.4 1,180,215 - Dsui_1128 0.46 -0.6 1,180,239 + Dsui_1128 0.48 -0.6 1,180,247 - Dsui_1128 0.49 +0.4 1,180,247 - Dsui_1128 0.49 -0.5 1,180,251 - Dsui_1128 0.49 -1.2 1,180,252 - Dsui_1128 0.49 +0.0 1,180,257 + Dsui_1128 0.50 +1.4 1,180,320 - Dsui_1128 0.55 -0.2 1,180,335 + Dsui_1128 0.56 +0.4 1,180,336 - Dsui_1128 0.56 -0.6 1,180,359 + Dsui_1128 0.58 +0.4 1,180,359 + Dsui_1128 0.58 -0.2 1,180,367 - Dsui_1128 0.59 -1.4 1,180,436 - Dsui_1128 0.64 -0.6 1,180,475 - Dsui_1128 0.67 -1.2 1,180,476 - Dsui_1128 0.67 +0.4 1,180,562 + Dsui_1128 0.74 -0.9 1,180,575 + Dsui_1128 0.75 -0.8 1,180,622 - Dsui_1128 0.79 +0.4 1,180,624 + Dsui_1128 0.79 -0.6 1,180,659 - Dsui_1128 0.82 -0.6 1,180,659 - Dsui_1128 0.82 -1.9 1,180,659 - Dsui_1128 0.82 -1.6 1,180,671 - Dsui_1128 0.83 -0.6 1,180,672 - Dsui_1128 0.83 -0.6 1,180,690 + Dsui_1128 0.84 -2.2 1,180,720 - Dsui_1128 0.87 +0.4 1,180,720 - Dsui_1128 0.87 -0.6 1,180,721 - Dsui_1128 0.87 -0.6 1,180,737 - Dsui_1128 0.88 -1.2 1,180,852 + +0.4 1,180,874 - -2.4 1,180,875 - -0.2 1,181,138 + Dsui_1129 0.21 -0.6 1,181,216 + Dsui_1129 0.27 -3.5 1,181,302 + Dsui_1129 0.34 +0.4 1,181,357 - Dsui_1129 0.39 -1.9 1,181,413 - Dsui_1129 0.43 -0.6 1,181,541 + Dsui_1129 0.53 +0.4 1,181,547 + Dsui_1129 0.54 +0.4 1,181,552 + Dsui_1129 0.54 -0.6 1,181,621 + Dsui_1129 0.60 -1.2
Or see this region's nucleotide sequence