Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0998 and Dsui_0999 are separated by 125 nucleotides Dsui_0999 and Dsui_1000 overlap by 4 nucleotides
Dsui_0998: Dsui_0998 - A/G-specific adenine glycosylase, at 1,025,548 to 1,026,609
_0998
Dsui_0999: Dsui_0999 - MoxR-like ATPase, at 1,026,735 to 1,027,658
_0999
Dsui_1000: Dsui_1000 - hypothetical protein, at 1,027,655 to 1,028,968
_1000
Position (kb)
1026
1027
1028 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1025.736 kb on - strand, within Dsui_0998 at 1025.751 kb on + strand, within Dsui_0998 at 1025.864 kb on - strand, within Dsui_0998 at 1025.954 kb on - strand, within Dsui_0998 at 1026.015 kb on + strand, within Dsui_0998 at 1026.020 kb on + strand, within Dsui_0998 at 1026.164 kb on + strand at 1026.352 kb on - strand, within Dsui_0998 at 1026.464 kb on - strand, within Dsui_0998 at 1026.546 kb on - strand at 1026.607 kb on - strand at 1026.607 kb on - strand at 1026.615 kb on + strand at 1026.615 kb on + strand at 1026.680 kb on - strand at 1026.752 kb on - strand at 1026.776 kb on - strand at 1026.868 kb on + strand, within Dsui_0999 at 1026.886 kb on - strand at 1026.893 kb on - strand, within Dsui_0999 at 1026.946 kb on + strand, within Dsui_0999 at 1027.019 kb on + strand, within Dsui_0999 at 1027.121 kb on + strand, within Dsui_0999 at 1027.124 kb on - strand at 1027.159 kb on + strand at 1027.247 kb on - strand, within Dsui_0999 at 1027.426 kb on + strand, within Dsui_0999 at 1027.462 kb on + strand, within Dsui_0999 at 1027.468 kb on + strand, within Dsui_0999 at 1027.472 kb on + strand, within Dsui_0999 at 1027.488 kb on + strand, within Dsui_0999 at 1027.491 kb on - strand at 1027.530 kb on - strand at 1027.560 kb on + strand, within Dsui_0999 at 1027.562 kb on - strand at 1027.630 kb on + strand at 1027.850 kb on + strand, within Dsui_1000 at 1027.949 kb on + strand, within Dsui_1000 at 1027.956 kb on + strand, within Dsui_1000 at 1028.249 kb on - strand at 1028.431 kb on - strand, within Dsui_1000 at 1028.441 kb on - strand at 1028.450 kb on + strand at 1028.577 kb on - strand at 1028.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 1,025,736 - Dsui_0998 0.18 +2.7 1,025,751 + Dsui_0998 0.19 -0.9 1,025,864 - Dsui_0998 0.30 -1.5 1,025,954 - Dsui_0998 0.38 -0.5 1,026,015 + Dsui_0998 0.44 +0.7 1,026,020 + Dsui_0998 0.44 -0.3 1,026,164 + -1.3 1,026,352 - Dsui_0998 0.76 +0.7 1,026,464 - Dsui_0998 0.86 -0.1 1,026,546 - -0.5 1,026,607 - +0.7 1,026,607 - -1.5 1,026,615 + -0.9 1,026,615 + +0.7 1,026,680 - -1.7 1,026,752 - +0.7 1,026,776 - +0.7 1,026,868 + Dsui_0999 0.14 -0.9 1,026,886 - +0.7 1,026,893 - Dsui_0999 0.17 -0.3 1,026,946 + Dsui_0999 0.23 -1.3 1,027,019 + Dsui_0999 0.31 -0.3 1,027,121 + Dsui_0999 0.42 -0.9 1,027,124 - +0.7 1,027,159 + +0.7 1,027,247 - Dsui_0999 0.55 -0.3 1,027,426 + Dsui_0999 0.75 -0.3 1,027,462 + Dsui_0999 0.79 +1.7 1,027,468 + Dsui_0999 0.79 -0.3 1,027,472 + Dsui_0999 0.80 -1.9 1,027,488 + Dsui_0999 0.81 -0.9 1,027,491 - -0.3 1,027,530 - -0.3 1,027,560 + Dsui_0999 0.89 +0.7 1,027,562 - -0.3 1,027,630 + +0.7 1,027,850 + Dsui_1000 0.15 -2.8 1,027,949 + Dsui_1000 0.22 -2.7 1,027,956 + Dsui_1000 0.23 -0.9 1,028,249 - +0.7 1,028,431 - Dsui_1000 0.59 -1.7 1,028,441 - +0.7 1,028,450 + -0.3 1,028,577 - +0.7 1,028,602 - +0.7
Or see this region's nucleotide sequence