Strain Fitness in Dechlorosoma suillum PS around Dsui_0997

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0996 and Dsui_0997 are separated by 366 nucleotidesDsui_0997 and Dsui_0998 are separated by 174 nucleotides Dsui_0996: Dsui_0996 - soluble lytic murein transglycosylase-like protein, at 1,022,272 to 1,022,979 _0996 Dsui_0997: Dsui_0997 - methyl-accepting chemotaxis protein, at 1,023,346 to 1,025,373 _0997 Dsui_0998: Dsui_0998 - A/G-specific adenine glycosylase, at 1,025,548 to 1,026,609 _0998 Position (kb) 1023 1024 1025 1026Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1022.552 kb on + strand, within Dsui_0996at 1022.643 kb on - strand, within Dsui_0996at 1022.701 kb on + strand, within Dsui_0996at 1022.701 kb on + strand, within Dsui_0996at 1022.709 kb on - strand, within Dsui_0996at 1022.901 kb on + strand, within Dsui_0996at 1022.906 kb on + strand, within Dsui_0996at 1022.909 kb on - strandat 1022.919 kb on - strandat 1023.015 kb on + strandat 1023.034 kb on - strandat 1023.121 kb on + strandat 1023.131 kb on + strandat 1023.132 kb on + strandat 1023.133 kb on + strandat 1023.141 kb on - strandat 1023.232 kb on + strandat 1023.232 kb on + strandat 1023.240 kb on - strandat 1023.341 kb on - strandat 1023.352 kb on - strandat 1023.392 kb on + strandat 1023.416 kb on + strandat 1023.424 kb on - strandat 1023.494 kb on + strandat 1023.502 kb on - strandat 1023.504 kb on + strandat 1023.651 kb on - strand, within Dsui_0997at 1023.655 kb on + strand, within Dsui_0997at 1023.663 kb on - strand, within Dsui_0997at 1023.725 kb on - strand, within Dsui_0997at 1023.963 kb on + strand, within Dsui_0997at 1024.002 kb on - strand, within Dsui_0997at 1024.013 kb on - strand, within Dsui_0997at 1024.163 kb on - strand, within Dsui_0997at 1024.168 kb on + strandat 1024.225 kb on + strand, within Dsui_0997at 1024.225 kb on + strand, within Dsui_0997at 1024.262 kb on + strandat 1024.390 kb on + strand, within Dsui_0997at 1024.409 kb on - strand, within Dsui_0997at 1024.416 kb on + strand, within Dsui_0997at 1024.416 kb on + strand, within Dsui_0997at 1024.466 kb on + strand, within Dsui_0997at 1024.479 kb on - strand, within Dsui_0997at 1024.487 kb on + strand, within Dsui_0997at 1024.505 kb on - strandat 1024.505 kb on - strand, within Dsui_0997at 1024.522 kb on + strand, within Dsui_0997at 1024.561 kb on - strand, within Dsui_0997at 1024.643 kb on + strand, within Dsui_0997at 1024.650 kb on - strand, within Dsui_0997at 1024.675 kb on - strand, within Dsui_0997at 1024.675 kb on - strand, within Dsui_0997at 1024.725 kb on - strand, within Dsui_0997at 1024.764 kb on + strand, within Dsui_0997at 1024.780 kb on + strand, within Dsui_0997at 1024.833 kb on - strand, within Dsui_0997at 1024.834 kb on - strand, within Dsui_0997at 1024.888 kb on - strandat 1024.953 kb on + strand, within Dsui_0997at 1025.018 kb on + strand, within Dsui_0997at 1025.032 kb on - strand, within Dsui_0997at 1025.123 kb on + strand, within Dsui_0997at 1025.157 kb on + strand, within Dsui_0997at 1025.181 kb on + strandat 1025.280 kb on + strandat 1025.325 kb on - strandat 1025.419 kb on + strandat 1025.419 kb on + strandat 1025.427 kb on + strandat 1025.427 kb on - strandat 1025.432 kb on - strandat 1025.435 kb on - strandat 1025.460 kb on - strandat 1025.464 kb on + strandat 1025.464 kb on + strandat 1025.506 kb on + strandat 1025.514 kb on - strandat 1025.603 kb on + strandat 1025.728 kb on + strand, within Dsui_0998at 1025.736 kb on - strand, within Dsui_0998at 1025.751 kb on + strand, within Dsui_0998at 1025.864 kb on - strand, within Dsui_0998at 1025.954 kb on - strand, within Dsui_0998at 1026.015 kb on + strand, within Dsui_0998at 1026.020 kb on + strand, within Dsui_0998at 1026.164 kb on + strandat 1026.352 kb on - strand, within Dsui_0998

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
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1,022,552 + Dsui_0996 0.40 +1.7
1,022,643 - Dsui_0996 0.52 +0.1
1,022,701 + Dsui_0996 0.61 -1.9
1,022,701 + Dsui_0996 0.61 -1.9
1,022,709 - Dsui_0996 0.62 -0.1
1,022,901 + Dsui_0996 0.89 +0.7
1,022,906 + Dsui_0996 0.90 -0.3
1,022,909 - +0.5
1,022,919 - +0.1
1,023,015 + +0.7
1,023,034 - +0.0
1,023,121 + -0.9
1,023,131 + -1.6
1,023,132 + -2.8
1,023,133 + -1.3
1,023,141 - +0.2
1,023,232 + -0.3
1,023,232 + -0.3
1,023,240 - +0.7
1,023,341 - +0.3
1,023,352 - -0.6
1,023,392 + -3.6
1,023,416 + +0.7
1,023,424 - -0.1
1,023,494 + -1.1
1,023,502 - -0.1
1,023,504 + -0.3
1,023,651 - Dsui_0997 0.15 +0.7
1,023,655 + Dsui_0997 0.15 +0.7
1,023,663 - Dsui_0997 0.16 -0.3
1,023,725 - Dsui_0997 0.19 +0.7
1,023,963 + Dsui_0997 0.30 +0.7
1,024,002 - Dsui_0997 0.32 -1.6
1,024,013 - Dsui_0997 0.33 +0.0
1,024,163 - Dsui_0997 0.40 -0.2
1,024,168 + +0.7
1,024,225 + Dsui_0997 0.43 -2.9
1,024,225 + Dsui_0997 0.43 -1.3
1,024,262 + +0.7
1,024,390 + Dsui_0997 0.51 +0.7
1,024,409 - Dsui_0997 0.52 +0.1
1,024,416 + Dsui_0997 0.53 -1.5
1,024,416 + Dsui_0997 0.53 +0.7
1,024,466 + Dsui_0997 0.55 -1.9
1,024,479 - Dsui_0997 0.56 -0.2
1,024,487 + Dsui_0997 0.56 -0.3
1,024,505 - +0.7
1,024,505 - Dsui_0997 0.57 -1.6
1,024,522 + Dsui_0997 0.58 -1.3
1,024,561 - Dsui_0997 0.60 -0.2
1,024,643 + Dsui_0997 0.64 -0.9
1,024,650 - Dsui_0997 0.64 -0.9
1,024,675 - Dsui_0997 0.66 -1.9
1,024,675 - Dsui_0997 0.66 -1.6
1,024,725 - Dsui_0997 0.68 +0.7
1,024,764 + Dsui_0997 0.70 +0.7
1,024,780 + Dsui_0997 0.71 -2.6
1,024,833 - Dsui_0997 0.73 -1.3
1,024,834 - Dsui_0997 0.73 -1.5
1,024,888 - +0.7
1,024,953 + Dsui_0997 0.79 +0.7
1,025,018 + Dsui_0997 0.82 -0.3
1,025,032 - Dsui_0997 0.83 +0.2
1,025,123 + Dsui_0997 0.88 +0.7
1,025,157 + Dsui_0997 0.89 -0.3
1,025,181 + -0.3
1,025,280 + -0.9
1,025,325 - -0.9
1,025,419 + +0.7
1,025,419 + +0.7
1,025,427 + -1.3
1,025,427 - -1.3
1,025,432 - -0.5
1,025,435 - -0.1
1,025,460 - -0.1
1,025,464 + +0.7
1,025,464 + -0.3
1,025,506 + +0.7
1,025,514 - -0.7
1,025,603 + -0.9
1,025,728 + Dsui_0998 0.17 -0.9
1,025,736 - Dsui_0998 0.18 +2.7
1,025,751 + Dsui_0998 0.19 -0.9
1,025,864 - Dsui_0998 0.30 -1.5
1,025,954 - Dsui_0998 0.38 -0.5
1,026,015 + Dsui_0998 0.44 +0.7
1,026,020 + Dsui_0998 0.44 -0.3
1,026,164 + -1.3
1,026,352 - Dsui_0998 0.76 +0.7

Or see this region's nucleotide sequence