Strain Fitness in Dechlorosoma suillum PS around Dsui_0899

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0898 and Dsui_0899 are separated by 327 nucleotidesDsui_0899 and Dsui_0900 are separated by 27 nucleotidesDsui_0900 and Dsui_0901 are separated by 23 nucleotides Dsui_0898: Dsui_0898 - outer membrane protein, at 915,755 to 917,002 _0898 Dsui_0899: Dsui_0899 - D-alanyl-D-alanine carboxypeptidase, at 917,330 to 918,499 _0899 Dsui_0900: Dsui_0900 - branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase, at 918,527 to 919,390 _0900 Dsui_0901: Dsui_0901 - hypothetical protein, at 919,414 to 919,713 _0901 Position (kb) 917 918 919Strain fitness (log2 ratio) -3 -2 -1 0 1at 916.330 kb on + strand, within Dsui_0898at 916.340 kb on - strand, within Dsui_0898at 916.342 kb on + strand, within Dsui_0898at 916.407 kb on + strand, within Dsui_0898at 916.417 kb on + strand, within Dsui_0898at 916.437 kb on - strandat 916.455 kb on + strand, within Dsui_0898at 916.476 kb on + strand, within Dsui_0898at 916.476 kb on + strand, within Dsui_0898at 916.592 kb on + strand, within Dsui_0898at 916.615 kb on + strandat 916.623 kb on - strand, within Dsui_0898at 916.667 kb on - strand, within Dsui_0898at 916.693 kb on - strandat 916.720 kb on + strand, within Dsui_0898at 916.732 kb on + strand, within Dsui_0898at 916.784 kb on - strand, within Dsui_0898at 916.899 kb on + strandat 916.899 kb on + strandat 916.921 kb on + strandat 916.929 kb on + strandat 916.953 kb on - strandat 916.982 kb on - strandat 916.984 kb on - strandat 917.039 kb on + strandat 917.040 kb on - strandat 917.047 kb on - strandat 917.064 kb on - strandat 917.180 kb on + strandat 917.188 kb on - strandat 917.233 kb on + strandat 917.313 kb on + strandat 917.353 kb on + strandat 917.386 kb on - strandat 917.428 kb on + strandat 917.456 kb on + strand, within Dsui_0899at 917.461 kb on + strand, within Dsui_0899at 917.484 kb on + strand, within Dsui_0899at 917.550 kb on - strandat 917.556 kb on + strand, within Dsui_0899at 917.562 kb on + strand, within Dsui_0899at 917.566 kb on + strand, within Dsui_0899at 917.602 kb on + strand, within Dsui_0899at 917.616 kb on - strand, within Dsui_0899at 917.731 kb on - strand, within Dsui_0899at 917.752 kb on - strand, within Dsui_0899at 917.805 kb on + strand, within Dsui_0899at 917.932 kb on - strand, within Dsui_0899at 917.935 kb on + strand, within Dsui_0899at 917.967 kb on + strand, within Dsui_0899at 917.977 kb on + strand, within Dsui_0899at 917.985 kb on - strand, within Dsui_0899at 917.985 kb on - strand, within Dsui_0899at 917.985 kb on - strand, within Dsui_0899at 917.995 kb on + strand, within Dsui_0899at 918.003 kb on - strand, within Dsui_0899at 918.126 kb on - strand, within Dsui_0899at 918.143 kb on - strand, within Dsui_0899at 918.144 kb on + strand, within Dsui_0899at 918.144 kb on + strand, within Dsui_0899at 918.198 kb on - strand, within Dsui_0899at 918.198 kb on - strand, within Dsui_0899at 918.202 kb on + strand, within Dsui_0899at 918.219 kb on + strand, within Dsui_0899at 918.227 kb on - strand, within Dsui_0899at 918.229 kb on + strand, within Dsui_0899at 918.237 kb on - strand, within Dsui_0899at 918.237 kb on - strand, within Dsui_0899at 918.241 kb on + strand, within Dsui_0899at 918.241 kb on + strand, within Dsui_0899at 918.241 kb on + strand, within Dsui_0899at 918.241 kb on + strand, within Dsui_0899at 918.241 kb on + strand, within Dsui_0899at 918.241 kb on + strand, within Dsui_0899at 918.241 kb on + strand, within Dsui_0899at 918.249 kb on - strand, within Dsui_0899at 918.249 kb on - strand, within Dsui_0899at 918.290 kb on + strand, within Dsui_0899at 918.297 kb on - strand, within Dsui_0899at 918.298 kb on - strand, within Dsui_0899at 918.303 kb on - strand, within Dsui_0899at 918.357 kb on + strand, within Dsui_0899at 918.357 kb on + strand, within Dsui_0899at 918.403 kb on + strandat 918.463 kb on - strandat 918.477 kb on + strandat 918.477 kb on + strandat 918.485 kb on - strandat 918.514 kb on - strandat 918.550 kb on + strandat 918.696 kb on + strand, within Dsui_0900at 918.696 kb on + strand, within Dsui_0900at 918.714 kb on - strand, within Dsui_0900at 918.782 kb on + strand, within Dsui_0900at 918.870 kb on + strand, within Dsui_0900at 918.977 kb on - strand, within Dsui_0900at 919.020 kb on + strand, within Dsui_0900at 919.101 kb on - strand, within Dsui_0900at 919.119 kb on + strand, within Dsui_0900at 919.214 kb on + strand, within Dsui_0900at 919.225 kb on - strand, within Dsui_0900at 919.320 kb on + strandat 919.384 kb on + strandat 919.476 kb on + strand, within Dsui_0901

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
remove
916,330 + Dsui_0898 0.46 -0.5
916,340 - Dsui_0898 0.47 +0.5
916,342 + Dsui_0898 0.47 +0.5
916,407 + Dsui_0898 0.52 +0.5
916,417 + Dsui_0898 0.53 -0.5
916,437 - +0.5
916,455 + Dsui_0898 0.56 +0.5
916,476 + Dsui_0898 0.58 -0.5
916,476 + Dsui_0898 0.58 +0.5
916,592 + Dsui_0898 0.67 +0.5
916,615 + +0.5
916,623 - Dsui_0898 0.70 -2.5
916,667 - Dsui_0898 0.73 -0.5
916,693 - +0.5
916,720 + Dsui_0898 0.77 +0.5
916,732 + Dsui_0898 0.78 -2.3
916,784 - Dsui_0898 0.82 -1.5
916,899 + +0.5
916,899 + +0.5
916,921 + -1.1
916,929 + -0.5
916,953 - -2.8
916,982 - +0.5
916,984 - +0.5
917,039 + +0.5
917,040 - -0.5
917,047 - -0.5
917,064 - -1.1
917,180 + -0.5
917,188 - +0.5
917,233 + -1.8
917,313 + -0.3
917,353 + +0.3
917,386 - -2.8
917,428 + +0.1
917,456 + Dsui_0899 0.11 +0.3
917,461 + Dsui_0899 0.11 +0.2
917,484 + Dsui_0899 0.13 +0.0
917,550 - -0.5
917,556 + Dsui_0899 0.19 -0.1
917,562 + Dsui_0899 0.20 +0.5
917,566 + Dsui_0899 0.20 +0.3
917,602 + Dsui_0899 0.23 +0.0
917,616 - Dsui_0899 0.24 -3.6
917,731 - Dsui_0899 0.34 +0.5
917,752 - Dsui_0899 0.36 +0.5
917,805 + Dsui_0899 0.41 +0.3
917,932 - Dsui_0899 0.51 +0.5
917,935 + Dsui_0899 0.52 +0.4
917,967 + Dsui_0899 0.54 +0.0
917,977 + Dsui_0899 0.55 +0.0
917,985 - Dsui_0899 0.56 -1.1
917,985 - Dsui_0899 0.56 -2.9
917,985 - Dsui_0899 0.56 +0.5
917,995 + Dsui_0899 0.57 +0.3
918,003 - Dsui_0899 0.58 -0.5
918,126 - Dsui_0899 0.68 +0.5
918,143 - Dsui_0899 0.69 -1.1
918,144 + Dsui_0899 0.70 +0.1
918,144 + Dsui_0899 0.70 +0.2
918,198 - Dsui_0899 0.74 -0.5
918,198 - Dsui_0899 0.74 -2.1
918,202 + Dsui_0899 0.75 -0.2
918,219 + Dsui_0899 0.76 +0.1
918,227 - Dsui_0899 0.77 +0.5
918,229 + Dsui_0899 0.77 +0.2
918,237 - Dsui_0899 0.78 +0.5
918,237 - Dsui_0899 0.78 +0.5
918,241 + Dsui_0899 0.78 +0.0
918,241 + Dsui_0899 0.78 +0.0
918,241 + Dsui_0899 0.78 -0.1
918,241 + Dsui_0899 0.78 +0.3
918,241 + Dsui_0899 0.78 -0.1
918,241 + Dsui_0899 0.78 +0.3
918,241 + Dsui_0899 0.78 +0.2
918,249 - Dsui_0899 0.79 +0.5
918,249 - Dsui_0899 0.79 -0.5
918,290 + Dsui_0899 0.82 +0.0
918,297 - Dsui_0899 0.83 -2.3
918,298 - Dsui_0899 0.83 -0.5
918,303 - Dsui_0899 0.83 -1.5
918,357 + Dsui_0899 0.88 +0.2
918,357 + Dsui_0899 0.88 +0.3
918,403 + +0.0
918,463 - +0.5
918,477 + +0.1
918,477 + +0.2
918,485 - -2.3
918,514 - +0.5
918,550 + -0.3
918,696 + Dsui_0900 0.20 -0.2
918,696 + Dsui_0900 0.20 -0.4
918,714 - Dsui_0900 0.22 -0.8
918,782 + Dsui_0900 0.30 -0.1
918,870 + Dsui_0900 0.40 -0.2
918,977 - Dsui_0900 0.52 -0.5
919,020 + Dsui_0900 0.57 +0.3
919,101 - Dsui_0900 0.66 -1.1
919,119 + Dsui_0900 0.69 -0.7
919,214 + Dsui_0900 0.80 +0.1
919,225 - Dsui_0900 0.81 -0.5
919,320 + -0.4
919,384 + -0.4
919,476 + Dsui_0901 0.21 +0.3

Or see this region's nucleotide sequence