Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0839 and Dsui_0840 are separated by 31 nucleotides Dsui_0840 and Dsui_0841 are separated by 148 nucleotides Dsui_0841 and Dsui_0842 overlap by 1 nucleotides
Dsui_0839: Dsui_0839 - ABC-type branched-chain amino acid transport system, periplasmic component, at 853,853 to 855,007
_0839
Dsui_0840: Dsui_0840 - ABC-type branched-chain amino acid transport system, periplasmic component, at 855,039 to 856,208
_0840
Dsui_0841: Dsui_0841 - ABC-type branched-chain amino acid transport systems, ATPase component, at 856,357 to 857,112
_0841
Dsui_0842: Dsui_0842 - ABC-type branched-chain amino acid transport systems, ATPase component, at 857,112 to 858,893
_0842
Position (kb)
855
856
857 Strain fitness (log2 ratio)
-2
-1
0
1 at 854.057 kb on + strand, within Dsui_0839 at 854.057 kb on + strand, within Dsui_0839 at 854.103 kb on - strand at 854.112 kb on + strand, within Dsui_0839 at 854.115 kb on - strand, within Dsui_0839 at 854.120 kb on - strand, within Dsui_0839 at 854.151 kb on - strand, within Dsui_0839 at 854.157 kb on - strand, within Dsui_0839 at 854.161 kb on + strand, within Dsui_0839 at 854.234 kb on + strand, within Dsui_0839 at 854.264 kb on + strand, within Dsui_0839 at 854.264 kb on + strand, within Dsui_0839 at 854.272 kb on - strand, within Dsui_0839 at 854.272 kb on - strand, within Dsui_0839 at 854.303 kb on + strand, within Dsui_0839 at 854.317 kb on - strand, within Dsui_0839 at 854.391 kb on + strand, within Dsui_0839 at 854.437 kb on - strand, within Dsui_0839 at 854.523 kb on + strand, within Dsui_0839 at 854.531 kb on - strand, within Dsui_0839 at 854.557 kb on + strand, within Dsui_0839 at 854.622 kb on + strand, within Dsui_0839 at 854.629 kb on + strand, within Dsui_0839 at 854.703 kb on + strand, within Dsui_0839 at 854.722 kb on - strand at 854.800 kb on + strand, within Dsui_0839 at 854.808 kb on - strand, within Dsui_0839 at 854.862 kb on - strand, within Dsui_0839 at 854.868 kb on - strand, within Dsui_0839 at 854.874 kb on + strand, within Dsui_0839 at 854.882 kb on - strand, within Dsui_0839 at 854.882 kb on - strand, within Dsui_0839 at 854.882 kb on - strand, within Dsui_0839 at 854.928 kb on + strand at 854.937 kb on + strand at 854.938 kb on - strand at 854.942 kb on + strand at 854.950 kb on - strand at 855.047 kb on - strand at 855.079 kb on + strand at 855.091 kb on + strand at 855.095 kb on + strand at 855.136 kb on - strand at 855.136 kb on - strand at 855.235 kb on - strand, within Dsui_0840 at 855.473 kb on - strand at 855.503 kb on + strand, within Dsui_0840 at 855.514 kb on + strand, within Dsui_0840 at 855.514 kb on + strand, within Dsui_0840 at 855.542 kb on - strand, within Dsui_0840 at 855.696 kb on - strand, within Dsui_0840 at 855.729 kb on + strand, within Dsui_0840 at 855.737 kb on - strand, within Dsui_0840 at 855.758 kb on + strand, within Dsui_0840 at 855.768 kb on + strand, within Dsui_0840 at 855.776 kb on - strand, within Dsui_0840 at 855.909 kb on + strand, within Dsui_0840 at 855.919 kb on + strand, within Dsui_0840 at 855.985 kb on - strand, within Dsui_0840 at 856.009 kb on + strand, within Dsui_0840 at 856.014 kb on + strand, within Dsui_0840 at 856.045 kb on + strand, within Dsui_0840 at 856.045 kb on - strand, within Dsui_0840 at 856.055 kb on + strand at 856.095 kb on - strand at 856.105 kb on + strand at 856.105 kb on + strand at 856.105 kb on + strand at 856.105 kb on + strand at 856.113 kb on + strand at 856.113 kb on - strand at 856.113 kb on - strand at 856.120 kb on + strand at 856.129 kb on - strand at 856.169 kb on + strand at 856.172 kb on - strand at 856.394 kb on - strand at 856.419 kb on + strand at 856.601 kb on - strand, within Dsui_0841 at 856.723 kb on + strand at 856.734 kb on + strand, within Dsui_0841 at 856.750 kb on - strand, within Dsui_0841 at 856.776 kb on + strand, within Dsui_0841 at 856.819 kb on + strand, within Dsui_0841 at 856.857 kb on - strand, within Dsui_0841 at 856.859 kb on + strand, within Dsui_0841 at 856.863 kb on - strand, within Dsui_0841 at 856.882 kb on + strand, within Dsui_0841 at 856.952 kb on - strand, within Dsui_0841 at 856.962 kb on - strand, within Dsui_0841 at 857.022 kb on + strand, within Dsui_0841 at 857.030 kb on - strand, within Dsui_0841 at 857.030 kb on - strand, within Dsui_0841 at 857.095 kb on - strand at 857.118 kb on - strand at 857.130 kb on - strand at 857.130 kb on - strand at 857.164 kb on + strand at 857.207 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 854,057 + Dsui_0839 0.18 -1.8 854,057 + Dsui_0839 0.18 +0.5 854,103 - +0.5 854,112 + Dsui_0839 0.22 +0.1 854,115 - Dsui_0839 0.23 +0.5 854,120 - Dsui_0839 0.23 -0.5 854,151 - Dsui_0839 0.26 -1.1 854,157 - Dsui_0839 0.26 -2.1 854,161 + Dsui_0839 0.27 +0.5 854,234 + Dsui_0839 0.33 -0.5 854,264 + Dsui_0839 0.36 -0.5 854,264 + Dsui_0839 0.36 -0.5 854,272 - Dsui_0839 0.36 +0.5 854,272 - Dsui_0839 0.36 -2.3 854,303 + Dsui_0839 0.39 -0.5 854,317 - Dsui_0839 0.40 +0.5 854,391 + Dsui_0839 0.47 +0.5 854,437 - Dsui_0839 0.51 +0.5 854,523 + Dsui_0839 0.58 -1.1 854,531 - Dsui_0839 0.59 -2.3 854,557 + Dsui_0839 0.61 +0.5 854,622 + Dsui_0839 0.67 -1.7 854,629 + Dsui_0839 0.67 +0.5 854,703 + Dsui_0839 0.74 -2.3 854,722 - +0.5 854,800 + Dsui_0839 0.82 -1.1 854,808 - Dsui_0839 0.83 +0.5 854,862 - Dsui_0839 0.87 +0.5 854,868 - Dsui_0839 0.88 -1.5 854,874 + Dsui_0839 0.88 -0.5 854,882 - Dsui_0839 0.89 +0.5 854,882 - Dsui_0839 0.89 -2.1 854,882 - Dsui_0839 0.89 -2.5 854,928 + -1.5 854,937 + -1.8 854,938 - -1.4 854,942 + -1.1 854,950 - -0.5 855,047 - -0.5 855,079 + -2.1 855,091 + +0.5 855,095 + +0.5 855,136 - +0.5 855,136 - -1.5 855,235 - Dsui_0840 0.17 +0.5 855,473 - +0.5 855,503 + Dsui_0840 0.40 -2.7 855,514 + Dsui_0840 0.41 -1.5 855,514 + Dsui_0840 0.41 +0.5 855,542 - Dsui_0840 0.43 -0.5 855,696 - Dsui_0840 0.56 -1.5 855,729 + Dsui_0840 0.59 -1.4 855,737 - Dsui_0840 0.60 +0.5 855,758 + Dsui_0840 0.61 -0.5 855,768 + Dsui_0840 0.62 -1.1 855,776 - Dsui_0840 0.63 -2.1 855,909 + Dsui_0840 0.74 +0.5 855,919 + Dsui_0840 0.75 +0.5 855,985 - Dsui_0840 0.81 -1.5 856,009 + Dsui_0840 0.83 -0.5 856,014 + Dsui_0840 0.83 -0.5 856,045 + Dsui_0840 0.86 -1.3 856,045 - Dsui_0840 0.86 -1.1 856,055 + +0.5 856,095 - +0.5 856,105 + +0.5 856,105 + -2.1 856,105 + -1.1 856,105 + -0.8 856,113 + -1.1 856,113 - +0.5 856,113 - -1.1 856,120 + -1.1 856,129 - -0.3 856,169 + -0.5 856,172 - -1.8 856,394 - +0.4 856,419 + -1.5 856,601 - Dsui_0841 0.32 -0.0 856,723 + +0.5 856,734 + Dsui_0841 0.50 +0.5 856,750 - Dsui_0841 0.52 +0.1 856,776 + Dsui_0841 0.55 -0.5 856,819 + Dsui_0841 0.61 -2.1 856,857 - Dsui_0841 0.66 -0.0 856,859 + Dsui_0841 0.66 +0.5 856,863 - Dsui_0841 0.67 +0.0 856,882 + Dsui_0841 0.69 -0.5 856,952 - Dsui_0841 0.79 -0.2 856,962 - Dsui_0841 0.80 +0.1 857,022 + Dsui_0841 0.88 -0.5 857,030 - Dsui_0841 0.89 -0.4 857,030 - Dsui_0841 0.89 -0.1 857,095 - -1.0 857,118 - +0.5 857,130 - -0.3 857,130 - -0.0 857,164 + -0.6 857,207 + -1.7
Or see this region's nucleotide sequence