Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0838 and Dsui_0839 are separated by 179 nucleotides Dsui_0839 and Dsui_0840 are separated by 31 nucleotides
Dsui_0838: Dsui_0838 - hypothetical protein, at 852,576 to 853,673
_0838
Dsui_0839: Dsui_0839 - ABC-type branched-chain amino acid transport system, periplasmic component, at 853,853 to 855,007
_0839
Dsui_0840: Dsui_0840 - ABC-type branched-chain amino acid transport system, periplasmic component, at 855,039 to 856,208
_0840
Position (kb)
853
854
855
856 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 852.860 kb on + strand at 852.860 kb on + strand, within Dsui_0838 at 852.929 kb on + strand, within Dsui_0838 at 852.950 kb on + strand at 853.004 kb on + strand at 853.058 kb on - strand at 853.147 kb on + strand, within Dsui_0838 at 853.147 kb on + strand, within Dsui_0838 at 853.188 kb on - strand, within Dsui_0838 at 853.226 kb on - strand, within Dsui_0838 at 853.241 kb on - strand at 853.243 kb on + strand, within Dsui_0838 at 853.244 kb on + strand, within Dsui_0838 at 853.252 kb on - strand at 853.253 kb on + strand, within Dsui_0838 at 853.263 kb on + strand, within Dsui_0838 at 853.289 kb on - strand, within Dsui_0838 at 853.296 kb on - strand at 853.425 kb on + strand, within Dsui_0838 at 853.460 kb on + strand, within Dsui_0838 at 853.485 kb on + strand, within Dsui_0838 at 853.485 kb on + strand, within Dsui_0838 at 853.488 kb on - strand, within Dsui_0838 at 853.535 kb on + strand, within Dsui_0838 at 853.575 kb on - strand at 853.593 kb on - strand at 853.798 kb on + strand at 853.798 kb on + strand at 853.850 kb on - strand at 853.924 kb on - strand at 853.938 kb on + strand at 853.959 kb on + strand at 854.013 kb on - strand at 854.057 kb on + strand, within Dsui_0839 at 854.057 kb on + strand, within Dsui_0839 at 854.103 kb on - strand at 854.112 kb on + strand, within Dsui_0839 at 854.115 kb on - strand, within Dsui_0839 at 854.120 kb on - strand, within Dsui_0839 at 854.151 kb on - strand, within Dsui_0839 at 854.157 kb on - strand, within Dsui_0839 at 854.161 kb on + strand, within Dsui_0839 at 854.234 kb on + strand, within Dsui_0839 at 854.264 kb on + strand, within Dsui_0839 at 854.264 kb on + strand, within Dsui_0839 at 854.272 kb on - strand, within Dsui_0839 at 854.272 kb on - strand, within Dsui_0839 at 854.303 kb on + strand, within Dsui_0839 at 854.317 kb on - strand, within Dsui_0839 at 854.391 kb on + strand, within Dsui_0839 at 854.437 kb on - strand, within Dsui_0839 at 854.523 kb on + strand, within Dsui_0839 at 854.531 kb on - strand, within Dsui_0839 at 854.557 kb on + strand, within Dsui_0839 at 854.622 kb on + strand, within Dsui_0839 at 854.629 kb on + strand, within Dsui_0839 at 854.703 kb on + strand, within Dsui_0839 at 854.722 kb on - strand at 854.800 kb on + strand, within Dsui_0839 at 854.808 kb on - strand, within Dsui_0839 at 854.862 kb on - strand, within Dsui_0839 at 854.868 kb on - strand, within Dsui_0839 at 854.874 kb on + strand, within Dsui_0839 at 854.882 kb on - strand, within Dsui_0839 at 854.882 kb on - strand, within Dsui_0839 at 854.882 kb on - strand, within Dsui_0839 at 854.928 kb on + strand at 854.937 kb on + strand at 854.938 kb on - strand at 854.942 kb on + strand at 854.950 kb on - strand at 855.047 kb on - strand at 855.079 kb on + strand at 855.091 kb on + strand at 855.095 kb on + strand at 855.136 kb on - strand at 855.136 kb on - strand at 855.235 kb on - strand, within Dsui_0840 at 855.473 kb on - strand at 855.503 kb on + strand, within Dsui_0840 at 855.514 kb on + strand, within Dsui_0840 at 855.514 kb on + strand, within Dsui_0840 at 855.542 kb on - strand, within Dsui_0840 at 855.696 kb on - strand, within Dsui_0840 at 855.729 kb on + strand, within Dsui_0840 at 855.737 kb on - strand, within Dsui_0840 at 855.758 kb on + strand, within Dsui_0840 at 855.768 kb on + strand, within Dsui_0840 at 855.776 kb on - strand, within Dsui_0840 at 855.909 kb on + strand, within Dsui_0840 at 855.919 kb on + strand, within Dsui_0840 at 855.985 kb on - strand, within Dsui_0840
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 852,860 + -1.1 852,860 + Dsui_0838 0.26 -1.8 852,929 + Dsui_0838 0.32 -1.1 852,950 + +0.5 853,004 + +0.5 853,058 - -0.5 853,147 + Dsui_0838 0.52 -1.5 853,147 + Dsui_0838 0.52 -3.0 853,188 - Dsui_0838 0.56 -1.1 853,226 - Dsui_0838 0.59 -1.8 853,241 - -0.5 853,243 + Dsui_0838 0.61 -1.1 853,244 + Dsui_0838 0.61 -1.5 853,252 - -0.5 853,253 + Dsui_0838 0.62 -0.5 853,263 + Dsui_0838 0.63 -0.5 853,289 - Dsui_0838 0.65 -1.5 853,296 - +0.5 853,425 + Dsui_0838 0.77 -1.5 853,460 + Dsui_0838 0.81 -0.5 853,485 + Dsui_0838 0.83 -1.5 853,485 + Dsui_0838 0.83 -1.5 853,488 - Dsui_0838 0.83 -1.5 853,535 + Dsui_0838 0.87 -1.1 853,575 - +0.5 853,593 - -0.5 853,798 + -0.3 853,798 + -0.4 853,850 - +0.5 853,924 - +0.5 853,938 + -0.9 853,959 + -0.5 854,013 - -1.1 854,057 + Dsui_0839 0.18 -1.8 854,057 + Dsui_0839 0.18 +0.5 854,103 - +0.5 854,112 + Dsui_0839 0.22 +0.1 854,115 - Dsui_0839 0.23 +0.5 854,120 - Dsui_0839 0.23 -0.5 854,151 - Dsui_0839 0.26 -1.1 854,157 - Dsui_0839 0.26 -2.1 854,161 + Dsui_0839 0.27 +0.5 854,234 + Dsui_0839 0.33 -0.5 854,264 + Dsui_0839 0.36 -0.5 854,264 + Dsui_0839 0.36 -0.5 854,272 - Dsui_0839 0.36 +0.5 854,272 - Dsui_0839 0.36 -2.3 854,303 + Dsui_0839 0.39 -0.5 854,317 - Dsui_0839 0.40 +0.5 854,391 + Dsui_0839 0.47 +0.5 854,437 - Dsui_0839 0.51 +0.5 854,523 + Dsui_0839 0.58 -1.1 854,531 - Dsui_0839 0.59 -2.3 854,557 + Dsui_0839 0.61 +0.5 854,622 + Dsui_0839 0.67 -1.7 854,629 + Dsui_0839 0.67 +0.5 854,703 + Dsui_0839 0.74 -2.3 854,722 - +0.5 854,800 + Dsui_0839 0.82 -1.1 854,808 - Dsui_0839 0.83 +0.5 854,862 - Dsui_0839 0.87 +0.5 854,868 - Dsui_0839 0.88 -1.5 854,874 + Dsui_0839 0.88 -0.5 854,882 - Dsui_0839 0.89 +0.5 854,882 - Dsui_0839 0.89 -2.1 854,882 - Dsui_0839 0.89 -2.5 854,928 + -1.5 854,937 + -1.8 854,938 - -1.4 854,942 + -1.1 854,950 - -0.5 855,047 - -0.5 855,079 + -2.1 855,091 + +0.5 855,095 + +0.5 855,136 - +0.5 855,136 - -1.5 855,235 - Dsui_0840 0.17 +0.5 855,473 - +0.5 855,503 + Dsui_0840 0.40 -2.7 855,514 + Dsui_0840 0.41 -1.5 855,514 + Dsui_0840 0.41 +0.5 855,542 - Dsui_0840 0.43 -0.5 855,696 - Dsui_0840 0.56 -1.5 855,729 + Dsui_0840 0.59 -1.4 855,737 - Dsui_0840 0.60 +0.5 855,758 + Dsui_0840 0.61 -0.5 855,768 + Dsui_0840 0.62 -1.1 855,776 - Dsui_0840 0.63 -2.1 855,909 + Dsui_0840 0.74 +0.5 855,919 + Dsui_0840 0.75 +0.5 855,985 - Dsui_0840 0.81 -1.5
Or see this region's nucleotide sequence