Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0816 and Dsui_0817 are separated by 55 nucleotides Dsui_0817 and Dsui_0818 are separated by 117 nucleotides Dsui_0818 and Dsui_0819 are separated by 9 nucleotides
Dsui_0816: Dsui_0816 - methionyl-tRNA formyltransferase, at 827,681 to 828,607
_0816
Dsui_0817: Dsui_0817 - peptide deformylase, at 828,663 to 829,166
_0817
Dsui_0818: Dsui_0818 - LysM domain-containing protein, at 829,284 to 830,339
_0818
Dsui_0819: Dsui_0819 - DNA protecting protein DprA, at 830,349 to 831,467
_0819
Position (kb) 829
830
831 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 828.639 kb on + strand at 828.639 kb on + strand at 828.639 kb on + strand at 828.639 kb on - strand at 828.639 kb on - strand at 828.639 kb on - strand at 828.644 kb on + strand at 828.644 kb on - strand at 828.647 kb on - strand at 828.647 kb on - strand at 828.652 kb on - strand at 829.151 kb on - strand at 829.155 kb on + strand at 829.163 kb on - strand at 829.189 kb on + strand at 829.225 kb on + strand at 829.225 kb on + strand at 829.232 kb on + strand at 829.232 kb on + strand at 829.232 kb on + strand at 829.232 kb on + strand at 829.232 kb on + strand at 829.232 kb on + strand at 829.232 kb on + strand at 829.232 kb on + strand at 829.235 kb on - strand at 829.240 kb on - strand at 829.240 kb on - strand at 829.240 kb on - strand at 829.240 kb on - strand at 829.240 kb on - strand at 829.266 kb on - strand at 829.266 kb on - strand at 829.266 kb on - strand at 829.311 kb on + strand at 829.311 kb on + strand at 829.311 kb on + strand at 829.311 kb on + strand at 829.311 kb on + strand at 829.311 kb on + strand at 829.319 kb on - strand at 829.319 kb on - strand at 829.319 kb on - strand at 829.319 kb on - strand at 829.343 kb on + strand at 829.382 kb on - strand at 829.404 kb on - strand, within Dsui_0818 at 829.438 kb on - strand, within Dsui_0818 at 829.473 kb on + strand, within Dsui_0818 at 829.473 kb on + strand, within Dsui_0818 at 829.481 kb on - strand, within Dsui_0818 at 829.481 kb on - strand, within Dsui_0818 at 829.574 kb on + strand, within Dsui_0818 at 829.620 kb on + strand, within Dsui_0818 at 829.628 kb on + strand, within Dsui_0818 at 829.628 kb on - strand, within Dsui_0818 at 829.677 kb on - strand, within Dsui_0818 at 829.681 kb on - strand, within Dsui_0818 at 829.696 kb on - strand, within Dsui_0818 at 829.702 kb on - strand, within Dsui_0818 at 829.709 kb on + strand, within Dsui_0818 at 829.768 kb on - strand, within Dsui_0818 at 829.792 kb on - strand, within Dsui_0818 at 829.792 kb on - strand, within Dsui_0818 at 829.792 kb on - strand, within Dsui_0818 at 829.792 kb on - strand, within Dsui_0818 at 829.806 kb on - strand, within Dsui_0818 at 829.806 kb on - strand, within Dsui_0818 at 829.852 kb on - strand, within Dsui_0818 at 829.852 kb on - strand, within Dsui_0818 at 829.863 kb on - strand, within Dsui_0818 at 829.864 kb on + strand, within Dsui_0818 at 829.880 kb on - strand, within Dsui_0818 at 829.880 kb on - strand, within Dsui_0818 at 829.887 kb on + strand, within Dsui_0818 at 829.911 kb on - strand, within Dsui_0818 at 829.911 kb on - strand, within Dsui_0818 at 830.014 kb on + strand, within Dsui_0818 at 830.015 kb on - strand, within Dsui_0818 at 830.017 kb on - strand, within Dsui_0818 at 830.043 kb on + strand, within Dsui_0818 at 830.050 kb on - strand, within Dsui_0818 at 830.064 kb on + strand, within Dsui_0818 at 830.064 kb on + strand, within Dsui_0818 at 830.072 kb on - strand, within Dsui_0818 at 830.103 kb on - strand, within Dsui_0818 at 830.103 kb on - strand, within Dsui_0818 at 830.103 kb on - strand, within Dsui_0818 at 830.111 kb on + strand, within Dsui_0818 at 830.111 kb on + strand, within Dsui_0818 at 830.111 kb on + strand, within Dsui_0818 at 830.147 kb on + strand, within Dsui_0818 at 830.147 kb on + strand, within Dsui_0818 at 830.155 kb on - strand, within Dsui_0818 at 830.175 kb on + strand, within Dsui_0818 at 830.175 kb on + strand, within Dsui_0818 at 830.175 kb on - strand, within Dsui_0818 at 830.176 kb on + strand, within Dsui_0818 at 830.203 kb on + strand, within Dsui_0818 at 830.203 kb on + strand, within Dsui_0818 at 830.213 kb on + strand, within Dsui_0818 at 830.221 kb on - strand, within Dsui_0818 at 830.234 kb on - strand at 830.286 kb on - strand at 830.298 kb on + strand at 830.309 kb on + strand at 830.364 kb on + strand at 830.376 kb on - strand at 830.453 kb on + strand at 830.461 kb on - strand, within Dsui_0819 at 830.500 kb on + strand, within Dsui_0819 at 830.543 kb on - strand, within Dsui_0819 at 830.546 kb on + strand, within Dsui_0819 at 830.547 kb on + strand, within Dsui_0819 at 830.555 kb on - strand, within Dsui_0819 at 830.555 kb on - strand, within Dsui_0819 at 830.555 kb on - strand, within Dsui_0819 at 830.581 kb on + strand, within Dsui_0819 at 830.595 kb on + strand, within Dsui_0819 at 830.603 kb on - strand, within Dsui_0819 at 830.605 kb on + strand, within Dsui_0819 at 830.634 kb on - strand, within Dsui_0819 at 830.645 kb on + strand, within Dsui_0819 at 830.653 kb on - strand, within Dsui_0819 at 830.658 kb on - strand, within Dsui_0819 at 830.662 kb on + strand, within Dsui_0819 at 830.662 kb on + strand, within Dsui_0819 at 830.685 kb on + strand, within Dsui_0819 at 830.688 kb on - strand, within Dsui_0819 at 830.688 kb on - strand, within Dsui_0819 at 830.693 kb on - strand, within Dsui_0819 at 830.693 kb on - strand, within Dsui_0819 at 830.693 kb on - strand, within Dsui_0819 at 830.693 kb on - strand, within Dsui_0819 at 830.718 kb on + strand, within Dsui_0819 at 830.726 kb on - strand, within Dsui_0819 at 830.733 kb on - strand, within Dsui_0819 at 830.733 kb on - strand, within Dsui_0819 at 830.771 kb on - strand, within Dsui_0819 at 830.801 kb on - strand, within Dsui_0819 at 830.817 kb on - strand, within Dsui_0819 at 830.858 kb on + strand, within Dsui_0819 at 830.879 kb on + strand, within Dsui_0819 at 830.879 kb on + strand, within Dsui_0819 at 830.887 kb on - strand, within Dsui_0819 at 830.929 kb on + strand, within Dsui_0819 at 830.962 kb on - strand, within Dsui_0819 at 831.017 kb on + strand, within Dsui_0819 at 831.019 kb on - strand, within Dsui_0819 at 831.020 kb on - strand, within Dsui_0819 at 831.020 kb on - strand, within Dsui_0819 at 831.025 kb on - strand, within Dsui_0819 at 831.029 kb on + strand, within Dsui_0819 at 831.088 kb on + strand, within Dsui_0819 at 831.112 kb on + strand, within Dsui_0819 at 831.171 kb on - strand, within Dsui_0819 at 831.183 kb on + strand, within Dsui_0819 at 831.330 kb on - strand, within Dsui_0819 at 831.330 kb on - strand, within Dsui_0819 at 831.330 kb on - strand, within Dsui_0819 at 831.332 kb on + strand, within Dsui_0819
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 828,639 + +0.0 828,639 + -0.9 828,639 + -0.9 828,639 - +0.1 828,639 - +0.0 828,639 - +0.2 828,644 + -1.8 828,644 - -0.1 828,647 - +0.2 828,647 - +0.0 828,652 - -0.1 829,151 - -0.4 829,155 + -1.1 829,163 - -0.4 829,189 + -0.5 829,225 + -0.1 829,225 + +0.2 829,232 + -0.2 829,232 + -0.0 829,232 + -0.6 829,232 + -0.3 829,232 + -0.2 829,232 + -0.2 829,232 + -0.7 829,232 + -0.6 829,235 - -0.1 829,240 - +0.1 829,240 - -0.2 829,240 - -0.2 829,240 - +0.2 829,240 - -0.2 829,266 - +0.4 829,266 - +0.3 829,266 - -0.1 829,311 + -0.2 829,311 + -0.2 829,311 + -0.0 829,311 + +0.0 829,311 + +0.2 829,311 + +0.5 829,319 - +0.2 829,319 - -0.0 829,319 - +0.2 829,319 - +0.3 829,343 + -0.1 829,382 - +0.5 829,404 - Dsui_0818 0.11 +0.5 829,438 - Dsui_0818 0.15 +0.5 829,473 + Dsui_0818 0.18 +0.7 829,473 + Dsui_0818 0.18 -0.9 829,481 - Dsui_0818 0.19 -1.1 829,481 - Dsui_0818 0.19 +0.5 829,574 + Dsui_0818 0.27 +0.1 829,620 + Dsui_0818 0.32 +0.3 829,628 + Dsui_0818 0.33 -0.0 829,628 - Dsui_0818 0.33 +0.5 829,677 - Dsui_0818 0.37 -1.7 829,681 - Dsui_0818 0.38 -1.5 829,696 - Dsui_0818 0.39 -0.5 829,702 - Dsui_0818 0.40 -0.5 829,709 + Dsui_0818 0.40 -0.0 829,768 - Dsui_0818 0.46 +0.5 829,792 - Dsui_0818 0.48 +0.5 829,792 - Dsui_0818 0.48 +1.1 829,792 - Dsui_0818 0.48 -0.5 829,792 - Dsui_0818 0.48 +0.5 829,806 - Dsui_0818 0.49 +0.5 829,806 - Dsui_0818 0.49 +1.5 829,852 - Dsui_0818 0.54 -0.8 829,852 - Dsui_0818 0.54 -1.8 829,863 - Dsui_0818 0.55 -0.8 829,864 + Dsui_0818 0.55 +0.1 829,880 - Dsui_0818 0.56 +0.5 829,880 - Dsui_0818 0.56 +0.5 829,887 + Dsui_0818 0.57 -0.0 829,911 - Dsui_0818 0.59 +0.3 829,911 - Dsui_0818 0.59 -2.1 830,014 + Dsui_0818 0.69 +0.0 830,015 - Dsui_0818 0.69 -2.2 830,017 - Dsui_0818 0.69 -0.5 830,043 + Dsui_0818 0.72 -0.1 830,050 - Dsui_0818 0.73 -0.9 830,064 + Dsui_0818 0.74 +0.3 830,064 + Dsui_0818 0.74 +0.2 830,072 - Dsui_0818 0.75 +0.5 830,103 - Dsui_0818 0.78 -1.5 830,103 - Dsui_0818 0.78 +0.8 830,103 - Dsui_0818 0.78 -1.9 830,111 + Dsui_0818 0.78 +0.3 830,111 + Dsui_0818 0.78 -0.3 830,111 + Dsui_0818 0.78 -0.1 830,147 + Dsui_0818 0.82 -0.6 830,147 + Dsui_0818 0.82 +0.1 830,155 - Dsui_0818 0.82 -1.5 830,175 + Dsui_0818 0.84 +0.2 830,175 + Dsui_0818 0.84 +0.3 830,175 - Dsui_0818 0.84 +0.5 830,176 + Dsui_0818 0.84 -0.1 830,203 + Dsui_0818 0.87 +0.5 830,203 + Dsui_0818 0.87 +0.3 830,213 + Dsui_0818 0.88 +0.0 830,221 - Dsui_0818 0.89 -0.5 830,234 - -1.1 830,286 - +0.5 830,298 + +0.2 830,309 + -0.2 830,364 + -0.1 830,376 - +0.5 830,453 + -0.2 830,461 - Dsui_0819 0.10 -0.9 830,500 + Dsui_0819 0.13 -1.1 830,543 - Dsui_0819 0.17 -3.1 830,546 + Dsui_0819 0.18 -0.3 830,547 + Dsui_0819 0.18 -0.0 830,555 - Dsui_0819 0.18 -1.3 830,555 - Dsui_0819 0.18 -1.8 830,555 - Dsui_0819 0.18 -1.8 830,581 + Dsui_0819 0.21 +2.8 830,595 + Dsui_0819 0.22 -0.1 830,603 - Dsui_0819 0.23 -1.8 830,605 + Dsui_0819 0.23 -0.2 830,634 - Dsui_0819 0.25 -2.1 830,645 + Dsui_0819 0.26 +0.2 830,653 - Dsui_0819 0.27 +2.5 830,658 - Dsui_0819 0.28 -0.5 830,662 + Dsui_0819 0.28 +0.2 830,662 + Dsui_0819 0.28 +0.1 830,685 + Dsui_0819 0.30 +0.4 830,688 - Dsui_0819 0.30 -0.7 830,688 - Dsui_0819 0.30 +0.5 830,693 - Dsui_0819 0.31 -2.3 830,693 - Dsui_0819 0.31 -1.5 830,693 - Dsui_0819 0.31 -0.2 830,693 - Dsui_0819 0.31 -0.7 830,718 + Dsui_0819 0.33 -0.3 830,726 - Dsui_0819 0.34 -1.5 830,733 - Dsui_0819 0.34 -1.1 830,733 - Dsui_0819 0.34 -0.5 830,771 - Dsui_0819 0.38 -1.5 830,801 - Dsui_0819 0.40 -1.8 830,817 - Dsui_0819 0.42 -1.0 830,858 + Dsui_0819 0.45 +0.1 830,879 + Dsui_0819 0.47 -0.0 830,879 + Dsui_0819 0.47 +0.1 830,887 - Dsui_0819 0.48 -2.9 830,929 + Dsui_0819 0.52 -0.4 830,962 - Dsui_0819 0.55 +0.5 831,017 + Dsui_0819 0.60 -0.2 831,019 - Dsui_0819 0.60 -1.7 831,020 - Dsui_0819 0.60 -0.5 831,020 - Dsui_0819 0.60 -1.1 831,025 - Dsui_0819 0.60 -2.3 831,029 + Dsui_0819 0.61 -1.3 831,088 + Dsui_0819 0.66 -1.1 831,112 + Dsui_0819 0.68 -1.8 831,171 - Dsui_0819 0.73 -2.1 831,183 + Dsui_0819 0.75 +1.5 831,330 - Dsui_0819 0.88 +0.5 831,330 - Dsui_0819 0.88 -0.8 831,330 - Dsui_0819 0.88 +0.5 831,332 + Dsui_0819 0.88 -0.8
Or see this region's nucleotide sequence