Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0654 and Dsui_0655 are separated by 125 nucleotides Dsui_0655 and Dsui_0656 are separated by 57 nucleotides Dsui_0656 and Dsui_0657 are separated by 33 nucleotides
Dsui_0654: Dsui_0654 - hypothetical protein, at 647,870 to 648,325
_0654
Dsui_0655: Dsui_0655 - putative membrane protein, at 648,451 to 649,077
_0655
Dsui_0656: Dsui_0656 - chemotaxis protein histidine kinase-like protein, at 649,135 to 655,254
_0656
Dsui_0657: Dsui_0657 - methyl-accepting chemotaxis protein, at 655,288 to 657,486
_0657
Position (kb) 649
650
651
652
653
654
655
656 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 648.138 kb on + strand, within Dsui_0654 at 648.144 kb on - strand at 648.185 kb on + strand, within Dsui_0654 at 648.190 kb on + strand, within Dsui_0654 at 648.193 kb on - strand, within Dsui_0654 at 648.211 kb on + strand, within Dsui_0654 at 648.225 kb on + strand at 648.226 kb on - strand, within Dsui_0654 at 648.274 kb on + strand, within Dsui_0654 at 648.282 kb on - strand at 648.399 kb on + strand at 648.421 kb on - strand at 648.421 kb on - strand at 648.423 kb on + strand at 648.448 kb on + strand at 648.497 kb on + strand at 648.505 kb on - strand at 648.582 kb on + strand, within Dsui_0655 at 648.592 kb on + strand, within Dsui_0655 at 648.600 kb on - strand, within Dsui_0655 at 648.622 kb on + strand, within Dsui_0655 at 648.675 kb on + strand, within Dsui_0655 at 648.712 kb on - strand, within Dsui_0655 at 648.910 kb on + strand, within Dsui_0655 at 649.004 kb on - strand, within Dsui_0655 at 649.004 kb on - strand, within Dsui_0655 at 649.006 kb on + strand, within Dsui_0655 at 649.014 kb on - strand, within Dsui_0655 at 649.072 kb on + strand at 649.073 kb on + strand at 649.080 kb on - strand at 649.157 kb on + strand at 649.157 kb on + strand at 649.157 kb on + strand at 649.211 kb on - strand at 649.215 kb on + strand at 649.216 kb on - strand at 649.243 kb on - strand at 649.334 kb on - strand at 649.395 kb on + strand at 649.403 kb on - strand at 649.478 kb on + strand at 649.486 kb on - strand at 649.529 kb on + strand at 649.546 kb on + strand at 649.610 kb on - strand at 649.783 kb on - strand, within Dsui_0656 at 649.804 kb on + strand, within Dsui_0656 at 649.852 kb on - strand, within Dsui_0656 at 649.852 kb on - strand, within Dsui_0656 at 649.853 kb on + strand, within Dsui_0656 at 649.867 kb on + strand, within Dsui_0656 at 649.885 kb on - strand, within Dsui_0656 at 649.913 kb on + strand, within Dsui_0656 at 649.973 kb on + strand, within Dsui_0656 at 649.997 kb on - strand, within Dsui_0656 at 650.332 kb on - strand, within Dsui_0656 at 650.515 kb on - strand, within Dsui_0656 at 650.589 kb on - strand, within Dsui_0656 at 650.641 kb on + strand at 651.166 kb on + strand at 651.169 kb on - strand, within Dsui_0656 at 651.436 kb on - strand, within Dsui_0656 at 651.494 kb on + strand, within Dsui_0656 at 651.502 kb on - strand, within Dsui_0656 at 651.502 kb on - strand, within Dsui_0656 at 651.502 kb on - strand, within Dsui_0656 at 651.638 kb on - strand, within Dsui_0656 at 651.730 kb on - strand, within Dsui_0656 at 651.776 kb on - strand, within Dsui_0656 at 651.839 kb on - strand, within Dsui_0656 at 651.840 kb on - strand, within Dsui_0656 at 651.889 kb on - strand, within Dsui_0656 at 651.919 kb on - strand, within Dsui_0656 at 651.923 kb on + strand, within Dsui_0656 at 651.923 kb on + strand, within Dsui_0656 at 651.959 kb on + strand, within Dsui_0656 at 651.967 kb on + strand, within Dsui_0656 at 652.080 kb on - strand, within Dsui_0656 at 652.503 kb on - strand, within Dsui_0656 at 652.790 kb on - strand, within Dsui_0656 at 652.941 kb on + strand at 652.949 kb on - strand, within Dsui_0656 at 652.949 kb on - strand, within Dsui_0656 at 652.971 kb on + strand at 653.103 kb on - strand, within Dsui_0656 at 653.130 kb on + strand at 653.143 kb on - strand, within Dsui_0656 at 653.191 kb on - strand, within Dsui_0656 at 653.246 kb on + strand, within Dsui_0656 at 653.339 kb on + strand at 653.339 kb on + strand at 653.347 kb on - strand, within Dsui_0656 at 653.468 kb on + strand, within Dsui_0656 at 653.877 kb on + strand at 653.885 kb on - strand, within Dsui_0656 at 653.900 kb on - strand, within Dsui_0656 at 653.969 kb on + strand at 653.977 kb on - strand, within Dsui_0656 at 654.125 kb on - strand, within Dsui_0656 at 654.171 kb on + strand at 654.174 kb on - strand, within Dsui_0656 at 654.287 kb on + strand at 654.356 kb on + strand, within Dsui_0656 at 654.402 kb on + strand at 654.414 kb on + strand at 654.589 kb on - strand, within Dsui_0656 at 654.758 kb on + strand at 654.791 kb on + strand at 654.824 kb on + strand at 654.882 kb on + strand at 655.011 kb on + strand at 655.022 kb on + strand at 655.051 kb on - strand at 655.070 kb on - strand at 655.213 kb on - strand at 655.224 kb on - strand at 655.252 kb on + strand at 655.304 kb on - strand at 655.304 kb on - strand at 655.384 kb on + strand at 655.491 kb on + strand at 655.749 kb on + strand, within Dsui_0657 at 655.817 kb on - strand, within Dsui_0657 at 655.817 kb on - strand, within Dsui_0657 at 655.868 kb on - strand, within Dsui_0657 at 655.901 kb on + strand at 655.920 kb on - strand, within Dsui_0657 at 655.996 kb on + strand, within Dsui_0657 at 656.035 kb on - strand, within Dsui_0657 at 656.085 kb on - strand, within Dsui_0657 at 656.089 kb on + strand, within Dsui_0657 at 656.102 kb on - strand, within Dsui_0657 at 656.131 kb on - strand, within Dsui_0657 at 656.137 kb on - strand, within Dsui_0657 at 656.220 kb on - strand, within Dsui_0657
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 648,138 + Dsui_0654 0.59 -1.2 648,144 - +0.4 648,185 + Dsui_0654 0.69 -1.2 648,190 + Dsui_0654 0.70 +0.4 648,193 - Dsui_0654 0.71 +0.4 648,211 + Dsui_0654 0.75 +0.4 648,225 + +0.4 648,226 - Dsui_0654 0.78 -0.6 648,274 + Dsui_0654 0.89 -1.2 648,282 - -1.2 648,399 + +0.4 648,421 - -2.4 648,421 - +0.4 648,423 + -1.9 648,448 + -1.6 648,497 + -1.6 648,505 - -0.6 648,582 + Dsui_0655 0.21 +0.1 648,592 + Dsui_0655 0.22 -1.3 648,600 - Dsui_0655 0.24 +0.4 648,622 + Dsui_0655 0.27 +0.8 648,675 + Dsui_0655 0.36 -0.3 648,712 - Dsui_0655 0.42 -2.4 648,910 + Dsui_0655 0.73 -0.8 649,004 - Dsui_0655 0.88 +0.4 649,004 - Dsui_0655 0.88 -3.1 649,006 + Dsui_0655 0.89 +1.4 649,014 - Dsui_0655 0.90 -0.6 649,072 + -0.3 649,073 + -0.6 649,080 - -0.6 649,157 + -2.1 649,157 + -0.6 649,157 + +0.4 649,211 - -0.4 649,215 + -0.0 649,216 - -0.2 649,243 - -0.5 649,334 - -0.6 649,395 + -0.6 649,403 - -0.5 649,478 + -0.6 649,486 - -0.3 649,529 + +0.4 649,546 + -1.2 649,610 - -0.1 649,783 - Dsui_0656 0.11 +0.2 649,804 + Dsui_0656 0.11 -0.3 649,852 - Dsui_0656 0.12 +0.1 649,852 - Dsui_0656 0.12 -0.3 649,853 + Dsui_0656 0.12 -2.2 649,867 + Dsui_0656 0.12 -1.6 649,885 - Dsui_0656 0.12 -0.2 649,913 + Dsui_0656 0.13 -0.6 649,973 + Dsui_0656 0.14 -0.2 649,997 - Dsui_0656 0.14 -0.7 650,332 - Dsui_0656 0.20 -0.5 650,515 - Dsui_0656 0.23 +0.0 650,589 - Dsui_0656 0.24 -0.3 650,641 + -1.6 651,166 + -1.6 651,169 - Dsui_0656 0.33 +0.1 651,436 - Dsui_0656 0.38 +0.5 651,494 + Dsui_0656 0.39 -1.4 651,502 - Dsui_0656 0.39 -0.4 651,502 - Dsui_0656 0.39 -0.0 651,502 - Dsui_0656 0.39 +0.3 651,638 - Dsui_0656 0.41 -0.0 651,730 - Dsui_0656 0.42 +0.2 651,776 - Dsui_0656 0.43 -0.1 651,839 - Dsui_0656 0.44 -0.2 651,840 - Dsui_0656 0.44 -0.3 651,889 - Dsui_0656 0.45 -0.4 651,919 - Dsui_0656 0.45 -0.6 651,923 + Dsui_0656 0.46 +0.4 651,923 + Dsui_0656 0.46 +1.4 651,959 + Dsui_0656 0.46 +0.4 651,967 + Dsui_0656 0.46 -1.2 652,080 - Dsui_0656 0.48 -0.1 652,503 - Dsui_0656 0.55 +0.2 652,790 - Dsui_0656 0.60 -0.4 652,941 + +0.4 652,949 - Dsui_0656 0.62 +0.2 652,949 - Dsui_0656 0.62 +0.2 652,971 + -1.2 653,103 - Dsui_0656 0.65 +0.1 653,130 + +0.4 653,143 - Dsui_0656 0.65 -0.1 653,191 - Dsui_0656 0.66 +0.2 653,246 + Dsui_0656 0.67 -0.6 653,339 + -0.6 653,339 + +0.4 653,347 - Dsui_0656 0.69 -0.0 653,468 + Dsui_0656 0.71 +0.4 653,877 + -0.6 653,885 - Dsui_0656 0.78 +0.2 653,900 - Dsui_0656 0.78 -0.4 653,969 + +0.4 653,977 - Dsui_0656 0.79 -0.2 654,125 - Dsui_0656 0.82 +0.1 654,171 + +0.4 654,174 - Dsui_0656 0.82 +0.0 654,287 + +2.0 654,356 + Dsui_0656 0.85 -2.2 654,402 + -1.2 654,414 + -0.6 654,589 - Dsui_0656 0.89 -0.2 654,758 + +0.4 654,791 + +0.4 654,824 + -0.6 654,882 + -2.0 655,011 + -0.6 655,022 + -0.2 655,051 - +0.1 655,070 - -0.3 655,213 - +0.0 655,224 - -0.3 655,252 + +0.1 655,304 - -0.5 655,304 - -0.5 655,384 + -1.9 655,491 + +0.4 655,749 + Dsui_0657 0.21 -0.6 655,817 - Dsui_0657 0.24 -0.1 655,817 - Dsui_0657 0.24 -0.3 655,868 - Dsui_0657 0.26 +0.1 655,901 + +0.4 655,920 - Dsui_0657 0.29 -0.3 655,996 + Dsui_0657 0.32 +0.2 656,035 - Dsui_0657 0.34 +0.6 656,085 - Dsui_0657 0.36 +0.1 656,089 + Dsui_0657 0.36 -1.0 656,102 - Dsui_0657 0.37 +0.0 656,131 - Dsui_0657 0.38 +0.3 656,137 - Dsui_0657 0.39 -0.4 656,220 - Dsui_0657 0.42 +0.1
Or see this region's nucleotide sequence