Strain Fitness in Dechlorosoma suillum PS around Dsui_0619

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0617 and Dsui_0618 are separated by 10 nucleotidesDsui_0618 and Dsui_0619 are separated by 52 nucleotidesDsui_0619 and Dsui_0620 are separated by 96 nucleotides Dsui_0617: Dsui_0617 - hypothetical protein, at 611,693 to 612,697 _0617 Dsui_0618: Dsui_0618 - putative lipoprotein involved in nitrous oxide reduction, at 612,708 to 613,274 _0618 Dsui_0619: Dsui_0619 - TonB-dependent siderophore receptor, at 613,327 to 615,690 _0619 Dsui_0620: Dsui_0620 - Fe2+-dicitrate sensor, membrane component, at 615,787 to 616,710 _0620 Position (kb) 613 614 615 616Strain fitness (log2 ratio) -3 -2 -1 0 1at 612.422 kb on - strand, within Dsui_0617at 612.578 kb on - strandat 612.603 kb on + strandat 612.675 kb on + strandat 612.746 kb on + strandat 612.810 kb on - strand, within Dsui_0618at 612.904 kb on - strand, within Dsui_0618at 612.916 kb on + strand, within Dsui_0618at 612.954 kb on - strand, within Dsui_0618at 613.094 kb on + strand, within Dsui_0618at 613.161 kb on + strand, within Dsui_0618at 613.259 kb on + strandat 613.259 kb on + strandat 613.259 kb on + strandat 613.277 kb on - strandat 613.290 kb on - strandat 613.401 kb on + strandat 613.401 kb on + strandat 613.569 kb on + strandat 613.569 kb on + strand, within Dsui_0619at 613.575 kb on + strand, within Dsui_0619at 613.577 kb on - strand, within Dsui_0619at 613.631 kb on - strand, within Dsui_0619at 613.631 kb on - strand, within Dsui_0619at 613.631 kb on - strand, within Dsui_0619at 613.730 kb on - strandat 613.730 kb on - strand, within Dsui_0619at 613.768 kb on - strand, within Dsui_0619at 613.825 kb on - strand, within Dsui_0619at 613.825 kb on - strand, within Dsui_0619at 613.857 kb on + strandat 613.867 kb on + strand, within Dsui_0619at 613.916 kb on + strand, within Dsui_0619at 613.941 kb on + strandat 613.969 kb on - strandat 614.051 kb on + strand, within Dsui_0619at 614.326 kb on + strand, within Dsui_0619at 614.326 kb on + strand, within Dsui_0619at 614.334 kb on - strandat 614.334 kb on - strand, within Dsui_0619at 614.335 kb on - strand, within Dsui_0619at 614.434 kb on - strand, within Dsui_0619at 614.454 kb on - strandat 614.481 kb on + strandat 614.489 kb on - strand, within Dsui_0619at 614.613 kb on - strandat 614.613 kb on - strand, within Dsui_0619at 614.744 kb on - strand, within Dsui_0619at 615.051 kb on - strand, within Dsui_0619at 615.073 kb on + strand, within Dsui_0619at 615.125 kb on - strand, within Dsui_0619at 615.176 kb on - strandat 615.194 kb on - strand, within Dsui_0619at 615.418 kb on + strand, within Dsui_0619at 615.501 kb on - strandat 615.509 kb on - strandat 615.600 kb on - strandat 615.623 kb on + strandat 615.623 kb on + strandat 615.696 kb on + strandat 615.708 kb on + strandat 615.813 kb on + strandat 615.823 kb on + strandat 615.973 kb on - strand, within Dsui_0620at 615.983 kb on - strand, within Dsui_0620at 615.988 kb on + strandat 615.990 kb on - strandat 616.067 kb on + strand, within Dsui_0620at 616.072 kb on + strand, within Dsui_0620at 616.080 kb on - strand, within Dsui_0620at 616.137 kb on - strand, within Dsui_0620at 616.179 kb on - strand, within Dsui_0620at 616.226 kb on - strand, within Dsui_0620at 616.231 kb on + strand, within Dsui_0620at 616.290 kb on + strand, within Dsui_0620at 616.533 kb on + strand, within Dsui_0620at 616.681 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
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612,422 - Dsui_0617 0.73 -1.6
612,578 - +0.4
612,603 + -1.2
612,675 + -0.8
612,746 + -1.1
612,810 - Dsui_0618 0.18 -2.0
612,904 - Dsui_0618 0.35 -1.2
612,916 + Dsui_0618 0.37 +0.4
612,954 - Dsui_0618 0.43 +0.4
613,094 + Dsui_0618 0.68 -0.6
613,161 + Dsui_0618 0.80 -3.0
613,259 + -1.6
613,259 + +0.4
613,259 + +0.4
613,277 - +0.4
613,290 - +0.4
613,401 + -2.8
613,401 + -0.6
613,569 + +0.4
613,569 + Dsui_0619 0.10 -2.5
613,575 + Dsui_0619 0.10 +0.4
613,577 - Dsui_0619 0.11 -0.6
613,631 - Dsui_0619 0.13 -2.2
613,631 - Dsui_0619 0.13 +0.4
613,631 - Dsui_0619 0.13 +0.4
613,730 - +0.4
613,730 - Dsui_0619 0.17 -0.6
613,768 - Dsui_0619 0.19 -1.7
613,825 - Dsui_0619 0.21 +0.3
613,825 - Dsui_0619 0.21 -2.7
613,857 + -1.2
613,867 + Dsui_0619 0.23 +0.3
613,916 + Dsui_0619 0.25 +0.3
613,941 + +0.3
613,969 - +0.3
614,051 + Dsui_0619 0.31 -1.2
614,326 + Dsui_0619 0.42 -0.7
614,326 + Dsui_0619 0.42 -0.7
614,334 - -1.2
614,334 - Dsui_0619 0.43 +0.3
614,335 - Dsui_0619 0.43 +0.3
614,434 - Dsui_0619 0.47 -1.7
614,454 - +0.3
614,481 + +0.3
614,489 - Dsui_0619 0.49 +0.3
614,613 - +0.3
614,613 - Dsui_0619 0.54 +0.3
614,744 - Dsui_0619 0.60 -0.7
615,051 - Dsui_0619 0.73 +0.3
615,073 + Dsui_0619 0.74 -1.2
615,125 - Dsui_0619 0.76 +0.3
615,176 - +0.3
615,194 - Dsui_0619 0.79 -0.7
615,418 + Dsui_0619 0.88 -0.7
615,501 - -0.7
615,509 - -0.7
615,600 - -1.2
615,623 + +0.3
615,623 + -1.7
615,696 + -1.2
615,708 + -0.7
615,813 + +0.3
615,823 + -1.2
615,973 - Dsui_0620 0.20 -2.2
615,983 - Dsui_0620 0.21 -1.7
615,988 + -0.7
615,990 - +0.3
616,067 + Dsui_0620 0.30 +0.3
616,072 + Dsui_0620 0.31 -1.2
616,080 - Dsui_0620 0.32 -2.5
616,137 - Dsui_0620 0.38 -3.1
616,179 - Dsui_0620 0.42 +0.3
616,226 - Dsui_0620 0.48 -2.0
616,231 + Dsui_0620 0.48 +0.3
616,290 + Dsui_0620 0.54 -2.8
616,533 + Dsui_0620 0.81 -3.0
616,681 + +0.3

Or see this region's nucleotide sequence