Strain Fitness in Dechlorosoma suillum PS around Dsui_0605

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0604 and Dsui_0605 are separated by 16 nucleotidesDsui_0605 and Dsui_0606 are separated by 84 nucleotides Dsui_0604: Dsui_0604 - pilus retraction protein PilT, at 598,978 to 600,021 _0604 Dsui_0605: Dsui_0605 - pilus retraction protein PilT, at 600,038 to 601,174 _0605 Dsui_0606: Dsui_0606 - putative N6-adenine-specific DNA methylase, at 601,259 to 602,431 _0606 Position (kb) 600 601 602Strain fitness (log2 ratio) -3 -2 -1 0 1at 599.128 kb on + strand, within Dsui_0604at 599.128 kb on + strand, within Dsui_0604at 599.154 kb on + strand, within Dsui_0604at 599.209 kb on - strand, within Dsui_0604at 599.291 kb on + strand, within Dsui_0604at 599.291 kb on + strand, within Dsui_0604at 599.291 kb on + strand, within Dsui_0604at 599.291 kb on + strand, within Dsui_0604at 599.356 kb on - strand, within Dsui_0604at 599.369 kb on - strandat 599.385 kb on + strand, within Dsui_0604at 599.387 kb on + strand, within Dsui_0604at 599.398 kb on - strand, within Dsui_0604at 599.447 kb on - strand, within Dsui_0604at 599.447 kb on - strand, within Dsui_0604at 599.479 kb on + strand, within Dsui_0604at 599.487 kb on - strand, within Dsui_0604at 599.487 kb on - strand, within Dsui_0604at 599.516 kb on + strand, within Dsui_0604at 599.542 kb on - strand, within Dsui_0604at 599.544 kb on + strand, within Dsui_0604at 599.598 kb on + strand, within Dsui_0604at 599.755 kb on - strand, within Dsui_0604at 599.883 kb on - strand, within Dsui_0604at 600.074 kb on - strandat 600.097 kb on - strandat 600.133 kb on - strandat 600.175 kb on - strand, within Dsui_0605at 600.206 kb on - strand, within Dsui_0605at 600.213 kb on + strand, within Dsui_0605at 600.418 kb on + strand, within Dsui_0605at 600.545 kb on - strand, within Dsui_0605at 600.553 kb on - strand, within Dsui_0605at 600.695 kb on - strand, within Dsui_0605at 600.828 kb on + strand, within Dsui_0605at 600.828 kb on + strand, within Dsui_0605at 600.828 kb on + strand, within Dsui_0605at 600.836 kb on - strand, within Dsui_0605at 600.836 kb on - strand, within Dsui_0605at 600.836 kb on - strand, within Dsui_0605at 600.860 kb on - strand, within Dsui_0605at 600.968 kb on - strand, within Dsui_0605at 601.245 kb on - strandat 601.258 kb on - strandat 601.310 kb on - strandat 601.314 kb on + strandat 601.407 kb on - strand, within Dsui_0606at 601.445 kb on - strand, within Dsui_0606at 601.560 kb on + strand, within Dsui_0606at 601.697 kb on + strand, within Dsui_0606at 601.702 kb on + strand, within Dsui_0606at 601.882 kb on + strandat 601.986 kb on + strand, within Dsui_0606at 602.163 kb on - strand, within Dsui_0606

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
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599,128 + Dsui_0604 0.14 -0.4
599,128 + Dsui_0604 0.14 -0.4
599,154 + Dsui_0604 0.17 -0.5
599,209 - Dsui_0604 0.22 -2.7
599,291 + Dsui_0604 0.30 -0.2
599,291 + Dsui_0604 0.30 -0.6
599,291 + Dsui_0604 0.30 -0.5
599,291 + Dsui_0604 0.30 -0.7
599,356 - Dsui_0604 0.36 +0.3
599,369 - +0.3
599,385 + Dsui_0604 0.39 -0.5
599,387 + Dsui_0604 0.39 -0.4
599,398 - Dsui_0604 0.40 -1.3
599,447 - Dsui_0604 0.45 -1.7
599,447 - Dsui_0604 0.45 -2.8
599,479 + Dsui_0604 0.48 -0.6
599,487 - Dsui_0604 0.49 -2.3
599,487 - Dsui_0604 0.49 +0.3
599,516 + Dsui_0604 0.52 -0.8
599,542 - Dsui_0604 0.54 +0.3
599,544 + Dsui_0604 0.54 +0.4
599,598 + Dsui_0604 0.59 -0.7
599,755 - Dsui_0604 0.74 +0.3
599,883 - Dsui_0604 0.87 +0.3
600,074 - -1.7
600,097 - -1.2
600,133 - +0.3
600,175 - Dsui_0605 0.12 +1.3
600,206 - Dsui_0605 0.15 -1.0
600,213 + Dsui_0605 0.15 +0.2
600,418 + Dsui_0605 0.33 -0.3
600,545 - Dsui_0605 0.45 -1.2
600,553 - Dsui_0605 0.45 -1.7
600,695 - Dsui_0605 0.58 +1.3
600,828 + Dsui_0605 0.69 -0.8
600,828 + Dsui_0605 0.69 -0.5
600,828 + Dsui_0605 0.69 -0.0
600,836 - Dsui_0605 0.70 -2.0
600,836 - Dsui_0605 0.70 +0.3
600,836 - Dsui_0605 0.70 -3.1
600,860 - Dsui_0605 0.72 -3.0
600,968 - Dsui_0605 0.82 -0.4
601,245 - -0.4
601,258 - -0.7
601,310 - +0.1
601,314 + -1.4
601,407 - Dsui_0606 0.13 -0.3
601,445 - Dsui_0606 0.16 -0.3
601,560 + Dsui_0606 0.26 -0.7
601,697 + Dsui_0606 0.37 -1.7
601,702 + Dsui_0606 0.38 -0.7
601,882 + +0.3
601,986 + Dsui_0606 0.62 -0.7
602,163 - Dsui_0606 0.77 -1.0

Or see this region's nucleotide sequence