Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0602 and Dsui_0603 are separated by 13 nucleotides Dsui_0603 and Dsui_0604 are separated by 158 nucleotides Dsui_0604 and Dsui_0605 are separated by 16 nucleotides
Dsui_0602: Dsui_0602 - pyrroline-5-carboxylate reductase, at 597,289 to 598,101
_0602
Dsui_0603: Dsui_0603 - pyridoxal phosphate enzyme, YggS family, at 598,115 to 598,819
_0603
Dsui_0604: Dsui_0604 - pilus retraction protein PilT, at 598,978 to 600,021
_0604
Dsui_0605: Dsui_0605 - pilus retraction protein PilT, at 600,038 to 601,174
_0605
Position (kb) 598
599
600
601 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 598.160 kb on - strand at 598.176 kb on + strand at 598.200 kb on + strand, within Dsui_0603 at 598.212 kb on + strand, within Dsui_0603 at 598.262 kb on + strand, within Dsui_0603 at 598.355 kb on - strand, within Dsui_0603 at 598.409 kb on + strand at 598.451 kb on - strand, within Dsui_0603 at 598.564 kb on + strand at 598.710 kb on + strand, within Dsui_0603 at 598.712 kb on - strand, within Dsui_0603 at 598.744 kb on + strand, within Dsui_0603 at 598.781 kb on + strand at 598.917 kb on - strand at 598.938 kb on - strand at 598.962 kb on + strand at 599.128 kb on + strand, within Dsui_0604 at 599.128 kb on + strand, within Dsui_0604 at 599.154 kb on + strand, within Dsui_0604 at 599.209 kb on - strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.356 kb on - strand, within Dsui_0604 at 599.369 kb on - strand at 599.385 kb on + strand, within Dsui_0604 at 599.387 kb on + strand, within Dsui_0604 at 599.398 kb on - strand, within Dsui_0604 at 599.447 kb on - strand, within Dsui_0604 at 599.447 kb on - strand, within Dsui_0604 at 599.479 kb on + strand, within Dsui_0604 at 599.487 kb on - strand, within Dsui_0604 at 599.487 kb on - strand, within Dsui_0604 at 599.516 kb on + strand, within Dsui_0604 at 599.542 kb on - strand, within Dsui_0604 at 599.544 kb on + strand, within Dsui_0604 at 599.598 kb on + strand, within Dsui_0604 at 599.755 kb on - strand, within Dsui_0604 at 599.883 kb on - strand, within Dsui_0604 at 600.074 kb on - strand at 600.097 kb on - strand at 600.133 kb on - strand at 600.175 kb on - strand, within Dsui_0605 at 600.206 kb on - strand, within Dsui_0605 at 600.213 kb on + strand, within Dsui_0605 at 600.418 kb on + strand, within Dsui_0605 at 600.545 kb on - strand, within Dsui_0605 at 600.553 kb on - strand, within Dsui_0605 at 600.695 kb on - strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.860 kb on - strand, within Dsui_0605 at 600.968 kb on - strand, within Dsui_0605
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 598,160 - -1.9 598,176 + -0.7 598,200 + Dsui_0603 0.12 -1.3 598,212 + Dsui_0603 0.14 -2.7 598,262 + Dsui_0603 0.21 -0.7 598,355 - Dsui_0603 0.34 -2.8 598,409 + +0.3 598,451 - Dsui_0603 0.48 -2.7 598,564 + -0.7 598,710 + Dsui_0603 0.84 -1.3 598,712 - Dsui_0603 0.85 -3.0 598,744 + Dsui_0603 0.89 -2.8 598,781 + +0.3 598,917 - +0.3 598,938 - +0.3 598,962 + -1.2 599,128 + Dsui_0604 0.14 -0.4 599,128 + Dsui_0604 0.14 -0.4 599,154 + Dsui_0604 0.17 -0.5 599,209 - Dsui_0604 0.22 -2.7 599,291 + Dsui_0604 0.30 -0.2 599,291 + Dsui_0604 0.30 -0.6 599,291 + Dsui_0604 0.30 -0.5 599,291 + Dsui_0604 0.30 -0.7 599,356 - Dsui_0604 0.36 +0.3 599,369 - +0.3 599,385 + Dsui_0604 0.39 -0.5 599,387 + Dsui_0604 0.39 -0.4 599,398 - Dsui_0604 0.40 -1.3 599,447 - Dsui_0604 0.45 -1.7 599,447 - Dsui_0604 0.45 -2.8 599,479 + Dsui_0604 0.48 -0.6 599,487 - Dsui_0604 0.49 -2.3 599,487 - Dsui_0604 0.49 +0.3 599,516 + Dsui_0604 0.52 -0.8 599,542 - Dsui_0604 0.54 +0.3 599,544 + Dsui_0604 0.54 +0.4 599,598 + Dsui_0604 0.59 -0.7 599,755 - Dsui_0604 0.74 +0.3 599,883 - Dsui_0604 0.87 +0.3 600,074 - -1.7 600,097 - -1.2 600,133 - +0.3 600,175 - Dsui_0605 0.12 +1.3 600,206 - Dsui_0605 0.15 -1.0 600,213 + Dsui_0605 0.15 +0.2 600,418 + Dsui_0605 0.33 -0.3 600,545 - Dsui_0605 0.45 -1.2 600,553 - Dsui_0605 0.45 -1.7 600,695 - Dsui_0605 0.58 +1.3 600,828 + Dsui_0605 0.69 -0.8 600,828 + Dsui_0605 0.69 -0.5 600,828 + Dsui_0605 0.69 -0.0 600,836 - Dsui_0605 0.70 -2.0 600,836 - Dsui_0605 0.70 +0.3 600,836 - Dsui_0605 0.70 -3.1 600,860 - Dsui_0605 0.72 -3.0 600,968 - Dsui_0605 0.82 -0.4
Or see this region's nucleotide sequence