Strain Fitness in Dechlorosoma suillum PS around Dsui_0309

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0308 and Dsui_0309 are separated by 2 nucleotidesDsui_0309 and Dsui_0310 are separated by 50 nucleotidesDsui_0310 and Dsui_0311 are separated by 99 nucleotides Dsui_0308: Dsui_0308 - Major Facilitator Superfamily transporter, at 309,826 to 311,151 _0308 Dsui_0309: Dsui_0309 - DNA/RNA helicase, superfamily II, at 311,154 to 312,485 _0309 Dsui_0310: Dsui_0310 - acyl-CoA hydrolase, at 312,536 to 313,036 _0310 Dsui_0311: Dsui_0311 - ATP-dependent DNA helicase RecG, at 313,136 to 315,211 _0311 Position (kb) 311 312 313Strain fitness (log2 ratio) -2 -1 0 1at 310.155 kb on + strandat 310.286 kb on - strand, within Dsui_0308at 310.292 kb on + strand, within Dsui_0308at 310.389 kb on + strandat 310.427 kb on + strandat 310.790 kb on - strand, within Dsui_0308at 310.871 kb on - strand, within Dsui_0308at 310.932 kb on + strand, within Dsui_0308at 310.965 kb on + strandat 311.155 kb on - strandat 311.160 kb on + strandat 311.274 kb on + strandat 311.329 kb on - strand, within Dsui_0309at 311.334 kb on + strand, within Dsui_0309at 311.335 kb on + strandat 311.365 kb on - strand, within Dsui_0309at 311.397 kb on + strandat 311.413 kb on - strand, within Dsui_0309at 311.437 kb on + strand, within Dsui_0309at 311.525 kb on + strandat 311.569 kb on + strand, within Dsui_0309at 311.611 kb on + strand, within Dsui_0309at 311.652 kb on - strand, within Dsui_0309at 311.698 kb on + strand, within Dsui_0309at 311.719 kb on + strand, within Dsui_0309at 311.776 kb on + strandat 311.776 kb on + strandat 311.783 kb on + strand, within Dsui_0309at 311.861 kb on + strandat 311.896 kb on + strand, within Dsui_0309at 311.896 kb on + strandat 311.941 kb on + strandat 312.073 kb on - strand, within Dsui_0309at 312.108 kb on + strand, within Dsui_0309at 312.108 kb on + strandat 312.115 kb on + strand, within Dsui_0309at 312.116 kb on - strand, within Dsui_0309at 312.181 kb on + strand, within Dsui_0309at 312.394 kb on + strandat 312.488 kb on - strandat 312.488 kb on - strandat 312.491 kb on + strandat 312.750 kb on + strand, within Dsui_0310at 312.805 kb on + strand, within Dsui_0310at 312.805 kb on + strandat 312.876 kb on - strand, within Dsui_0310at 312.917 kb on + strandat 312.925 kb on - strand, within Dsui_0310at 312.925 kb on - strand, within Dsui_0310at 312.925 kb on - strand, within Dsui_0310at 312.925 kb on - strand, within Dsui_0310at 312.947 kb on - strand, within Dsui_0310at 313.031 kb on + strandat 313.064 kb on + strandat 313.080 kb on - strandat 313.100 kb on + strandat 313.124 kb on - strandat 313.140 kb on + strandat 313.148 kb on - strandat 313.153 kb on + strandat 313.224 kb on + strandat 313.267 kb on + strandat 313.267 kb on + strandat 313.295 kb on + strandat 313.370 kb on - strand, within Dsui_0311at 313.412 kb on - strand, within Dsui_0311

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
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310,155 + -1.5
310,286 - Dsui_0308 0.35 -0.4
310,292 + Dsui_0308 0.35 -1.5
310,389 + +0.5
310,427 + +0.5
310,790 - Dsui_0308 0.73 -2.1
310,871 - Dsui_0308 0.79 -1.1
310,932 + Dsui_0308 0.83 -2.5
310,965 + +0.5
311,155 - -1.1
311,160 + +0.5
311,274 + -2.1
311,329 - Dsui_0309 0.13 -0.5
311,334 + Dsui_0309 0.14 -1.1
311,335 + +0.5
311,365 - Dsui_0309 0.16 -0.7
311,397 + +0.5
311,413 - Dsui_0309 0.19 -2.5
311,437 + Dsui_0309 0.21 -1.5
311,525 + +0.5
311,569 + Dsui_0309 0.31 +0.5
311,611 + Dsui_0309 0.34 -0.5
311,652 - Dsui_0309 0.37 -0.6
311,698 + Dsui_0309 0.41 -1.1
311,719 + Dsui_0309 0.42 +0.5
311,776 + +0.5
311,776 + +0.5
311,783 + Dsui_0309 0.47 -2.3
311,861 + +0.5
311,896 + Dsui_0309 0.56 +0.5
311,896 + +0.5
311,941 + +0.5
312,073 - Dsui_0309 0.69 -0.2
312,108 + Dsui_0309 0.72 -0.5
312,108 + -1.8
312,115 + Dsui_0309 0.72 +0.5
312,116 - Dsui_0309 0.72 -0.1
312,181 + Dsui_0309 0.77 -2.1
312,394 + -1.1
312,488 - +0.3
312,488 - -0.1
312,491 + +0.5
312,750 + Dsui_0310 0.43 -0.5
312,805 + Dsui_0310 0.54 -1.5
312,805 + +0.5
312,876 - Dsui_0310 0.68 +0.1
312,917 + -1.1
312,925 - Dsui_0310 0.78 -0.3
312,925 - Dsui_0310 0.78 -0.3
312,925 - Dsui_0310 0.78 -0.3
312,925 - Dsui_0310 0.78 -0.5
312,947 - Dsui_0310 0.82 -1.4
313,031 + +0.5
313,064 + +0.5
313,080 - -0.4
313,100 + +0.5
313,124 - -0.5
313,140 + +0.5
313,148 - -0.6
313,153 + -1.1
313,224 + +0.5
313,267 + -2.7
313,267 + -0.5
313,295 + -1.1
313,370 - Dsui_0311 0.11 -0.2
313,412 - Dsui_0311 0.13 -1.1

Or see this region's nucleotide sequence