Strain Fitness in Dechlorosoma suillum PS around Dsui_0117

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0115 and Dsui_0116 are separated by 116 nucleotidesDsui_0116 and Dsui_0117 are separated by 42 nucleotidesDsui_0117 and Dsui_0118 are separated by 153 nucleotidesDsui_0118 and Dsui_0119 are separated by 31 nucleotides Dsui_0115: Dsui_0115 - hypothetical protein, at 113,954 to 114,448 _0115 Dsui_0116: Dsui_0116 - alkylhydroperoxidase AhpD family core domain protein, at 114,565 to 114,924 _0116 Dsui_0117: Dsui_0117 - methyl-accepting chemotaxis protein, at 114,967 to 116,610 _0117 Dsui_0118: Dsui_0118 - monothiol glutaredoxin, Grx4 family, at 116,764 to 117,084 _0118 Dsui_0119: Dsui_0119 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 117,116 to 117,961 _0119 Position (kb) 114 115 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 113.985 kb on - strandat 113.999 kb on + strandat 114.006 kb on - strand, within Dsui_0115at 114.030 kb on - strand, within Dsui_0115at 114.051 kb on - strand, within Dsui_0115at 114.062 kb on + strand, within Dsui_0115at 114.121 kb on + strand, within Dsui_0115at 114.185 kb on - strand, within Dsui_0115at 114.206 kb on - strand, within Dsui_0115at 114.285 kb on + strand, within Dsui_0115at 114.293 kb on - strand, within Dsui_0115at 114.331 kb on - strand, within Dsui_0115at 114.421 kb on + strandat 114.444 kb on - strandat 114.496 kb on - strandat 114.499 kb on + strandat 114.514 kb on + strandat 114.562 kb on + strandat 114.615 kb on - strandat 114.621 kb on + strandat 114.775 kb on + strand, within Dsui_0116at 114.775 kb on + strand, within Dsui_0116at 114.826 kb on - strand, within Dsui_0116at 114.853 kb on + strand, within Dsui_0116at 114.866 kb on - strandat 114.885 kb on - strand, within Dsui_0116at 114.889 kb on - strandat 114.900 kb on - strandat 115.004 kb on + strandat 115.012 kb on - strandat 115.016 kb on + strandat 115.024 kb on - strandat 115.086 kb on + strandat 115.142 kb on - strand, within Dsui_0117at 115.185 kb on + strand, within Dsui_0117at 115.256 kb on - strand, within Dsui_0117at 115.369 kb on - strand, within Dsui_0117at 115.411 kb on + strand, within Dsui_0117at 115.419 kb on - strand, within Dsui_0117at 115.463 kb on + strand, within Dsui_0117at 115.601 kb on - strand, within Dsui_0117at 115.728 kb on + strandat 115.738 kb on + strandat 115.738 kb on + strand, within Dsui_0117at 115.738 kb on + strand, within Dsui_0117at 115.741 kb on - strandat 115.766 kb on + strand, within Dsui_0117at 115.783 kb on + strand, within Dsui_0117at 115.789 kb on + strand, within Dsui_0117at 115.794 kb on + strand, within Dsui_0117at 115.804 kb on + strand, within Dsui_0117at 115.812 kb on - strand, within Dsui_0117at 115.829 kb on - strand, within Dsui_0117at 115.835 kb on + strand, within Dsui_0117at 115.874 kb on + strand, within Dsui_0117at 115.904 kb on + strand, within Dsui_0117at 115.904 kb on + strand, within Dsui_0117at 115.911 kb on + strand, within Dsui_0117at 115.940 kb on + strand, within Dsui_0117at 115.982 kb on - strand, within Dsui_0117at 116.043 kb on + strand, within Dsui_0117at 116.125 kb on + strandat 116.127 kb on + strandat 116.137 kb on - strand, within Dsui_0117at 116.146 kb on + strand, within Dsui_0117at 116.207 kb on + strand, within Dsui_0117at 116.256 kb on - strand, within Dsui_0117at 116.281 kb on - strand, within Dsui_0117at 116.290 kb on - strand, within Dsui_0117at 116.329 kb on - strand, within Dsui_0117at 116.331 kb on + strand, within Dsui_0117at 116.339 kb on - strand, within Dsui_0117at 116.379 kb on + strand, within Dsui_0117at 116.379 kb on + strand, within Dsui_0117at 116.379 kb on + strand, within Dsui_0117at 116.387 kb on - strand, within Dsui_0117at 116.387 kb on - strand, within Dsui_0117at 116.509 kb on + strandat 116.509 kb on + strandat 116.592 kb on + strandat 116.592 kb on + strandat 116.759 kb on - strandat 116.759 kb on - strandat 116.762 kb on + strandat 116.762 kb on + strandat 116.769 kb on - strandat 116.775 kb on - strandat 116.870 kb on + strand, within Dsui_0118at 116.922 kb on - strand, within Dsui_0118at 116.939 kb on + strand, within Dsui_0118at 116.957 kb on - strand, within Dsui_0118at 116.970 kb on - strand, within Dsui_0118at 116.974 kb on - strand, within Dsui_0118at 117.036 kb on - strand, within Dsui_0118at 117.069 kb on + strandat 117.094 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
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113,985 - +0.3
113,999 + +0.7
114,006 - Dsui_0115 0.11 +0.3
114,030 - Dsui_0115 0.15 +0.3
114,051 - Dsui_0115 0.20 -1.0
114,062 + Dsui_0115 0.22 -0.3
114,121 + Dsui_0115 0.34 -0.3
114,185 - Dsui_0115 0.47 -0.1
114,206 - Dsui_0115 0.51 +0.6
114,285 + Dsui_0115 0.67 -1.3
114,293 - Dsui_0115 0.68 -0.5
114,331 - Dsui_0115 0.76 +0.2
114,421 + -0.9
114,444 - -0.5
114,496 - -0.3
114,499 + -1.3
114,514 + +0.7
114,562 + +0.7
114,615 - -1.3
114,621 + +0.7
114,775 + Dsui_0116 0.58 +0.7
114,775 + Dsui_0116 0.58 +0.7
114,826 - Dsui_0116 0.72 -0.9
114,853 + Dsui_0116 0.80 -3.1
114,866 - +0.7
114,885 - Dsui_0116 0.89 +0.7
114,889 - -0.9
114,900 - -0.3
115,004 + -0.3
115,012 - -2.3
115,016 + -0.9
115,024 - -1.6
115,086 + +0.7
115,142 - Dsui_0117 0.11 -0.9
115,185 + Dsui_0117 0.13 +0.7
115,256 - Dsui_0117 0.18 -0.9
115,369 - Dsui_0117 0.24 +0.7
115,411 + Dsui_0117 0.27 +0.7
115,419 - Dsui_0117 0.27 +3.0
115,463 + Dsui_0117 0.30 -0.3
115,601 - Dsui_0117 0.39 +0.7
115,728 + +0.7
115,738 + -0.3
115,738 + Dsui_0117 0.47 +0.7
115,738 + Dsui_0117 0.47 -1.3
115,741 - +0.7
115,766 + Dsui_0117 0.49 -0.3
115,783 + Dsui_0117 0.50 -0.9
115,789 + Dsui_0117 0.50 -1.6
115,794 + Dsui_0117 0.50 -0.9
115,804 + Dsui_0117 0.51 -0.3
115,812 - Dsui_0117 0.51 -0.6
115,829 - Dsui_0117 0.52 -0.9
115,835 + Dsui_0117 0.53 -0.9
115,874 + Dsui_0117 0.55 -0.3
115,904 + Dsui_0117 0.57 -0.9
115,904 + Dsui_0117 0.57 +0.7
115,911 + Dsui_0117 0.57 -2.6
115,940 + Dsui_0117 0.59 -2.1
115,982 - Dsui_0117 0.62 -0.9
116,043 + Dsui_0117 0.65 +0.7
116,125 + -0.3
116,127 + +0.7
116,137 - Dsui_0117 0.71 -0.3
116,146 + Dsui_0117 0.72 -0.3
116,207 + Dsui_0117 0.75 -0.3
116,256 - Dsui_0117 0.78 -1.1
116,281 - Dsui_0117 0.80 -0.3
116,290 - Dsui_0117 0.80 -1.4
116,329 - Dsui_0117 0.83 +0.3
116,331 + Dsui_0117 0.83 +0.7
116,339 - Dsui_0117 0.83 +0.1
116,379 + Dsui_0117 0.86 +0.7
116,379 + Dsui_0117 0.86 +0.7
116,379 + Dsui_0117 0.86 +0.7
116,387 - Dsui_0117 0.86 -0.9
116,387 - Dsui_0117 0.86 -1.0
116,509 + -1.6
116,509 + -2.5
116,592 + -1.6
116,592 + +0.7
116,759 - +0.0
116,759 - +0.2
116,762 + -0.3
116,762 + -0.9
116,769 - +0.5
116,775 - -0.1
116,870 + Dsui_0118 0.33 -0.9
116,922 - Dsui_0118 0.49 -0.2
116,939 + Dsui_0118 0.55 -0.9
116,957 - Dsui_0118 0.60 -0.3
116,970 - Dsui_0118 0.64 -0.4
116,974 - Dsui_0118 0.65 +0.1
117,036 - Dsui_0118 0.85 -0.4
117,069 + -1.3
117,094 - -0.2

Or see this region's nucleotide sequence