Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0115 and Dsui_0116 are separated by 116 nucleotides Dsui_0116 and Dsui_0117 are separated by 42 nucleotides Dsui_0117 and Dsui_0118 are separated by 153 nucleotides Dsui_0118 and Dsui_0119 are separated by 31 nucleotides
Dsui_0115: Dsui_0115 - hypothetical protein, at 113,954 to 114,448
_0115
Dsui_0116: Dsui_0116 - alkylhydroperoxidase AhpD family core domain protein, at 114,565 to 114,924
_0116
Dsui_0117: Dsui_0117 - methyl-accepting chemotaxis protein, at 114,967 to 116,610
_0117
Dsui_0118: Dsui_0118 - monothiol glutaredoxin, Grx4 family, at 116,764 to 117,084
_0118
Dsui_0119: Dsui_0119 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 117,116 to 117,961
_0119
Position (kb)
114
115
116
117 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 113.985 kb on - strand at 113.999 kb on + strand at 114.006 kb on - strand, within Dsui_0115 at 114.030 kb on - strand, within Dsui_0115 at 114.051 kb on - strand, within Dsui_0115 at 114.062 kb on + strand, within Dsui_0115 at 114.121 kb on + strand, within Dsui_0115 at 114.185 kb on - strand, within Dsui_0115 at 114.206 kb on - strand, within Dsui_0115 at 114.285 kb on + strand, within Dsui_0115 at 114.293 kb on - strand, within Dsui_0115 at 114.331 kb on - strand, within Dsui_0115 at 114.421 kb on + strand at 114.444 kb on - strand at 114.496 kb on - strand at 114.499 kb on + strand at 114.514 kb on + strand at 114.562 kb on + strand at 114.615 kb on - strand at 114.621 kb on + strand at 114.775 kb on + strand, within Dsui_0116 at 114.775 kb on + strand, within Dsui_0116 at 114.826 kb on - strand, within Dsui_0116 at 114.853 kb on + strand, within Dsui_0116 at 114.866 kb on - strand at 114.885 kb on - strand, within Dsui_0116 at 114.889 kb on - strand at 114.900 kb on - strand at 115.004 kb on + strand at 115.012 kb on - strand at 115.016 kb on + strand at 115.024 kb on - strand at 115.086 kb on + strand at 115.142 kb on - strand, within Dsui_0117 at 115.185 kb on + strand, within Dsui_0117 at 115.256 kb on - strand, within Dsui_0117 at 115.369 kb on - strand, within Dsui_0117 at 115.411 kb on + strand, within Dsui_0117 at 115.419 kb on - strand, within Dsui_0117 at 115.463 kb on + strand, within Dsui_0117 at 115.601 kb on - strand, within Dsui_0117 at 115.728 kb on + strand at 115.738 kb on + strand at 115.738 kb on + strand, within Dsui_0117 at 115.738 kb on + strand, within Dsui_0117 at 115.741 kb on - strand at 115.766 kb on + strand, within Dsui_0117 at 115.783 kb on + strand, within Dsui_0117 at 115.789 kb on + strand, within Dsui_0117 at 115.794 kb on + strand, within Dsui_0117 at 115.804 kb on + strand, within Dsui_0117 at 115.812 kb on - strand, within Dsui_0117 at 115.829 kb on - strand, within Dsui_0117 at 115.835 kb on + strand, within Dsui_0117 at 115.874 kb on + strand, within Dsui_0117 at 115.904 kb on + strand, within Dsui_0117 at 115.904 kb on + strand, within Dsui_0117 at 115.911 kb on + strand, within Dsui_0117 at 115.940 kb on + strand, within Dsui_0117 at 115.982 kb on - strand, within Dsui_0117 at 116.043 kb on + strand, within Dsui_0117 at 116.125 kb on + strand at 116.127 kb on + strand at 116.137 kb on - strand, within Dsui_0117 at 116.146 kb on + strand, within Dsui_0117 at 116.207 kb on + strand, within Dsui_0117 at 116.256 kb on - strand, within Dsui_0117 at 116.281 kb on - strand, within Dsui_0117 at 116.290 kb on - strand, within Dsui_0117 at 116.329 kb on - strand, within Dsui_0117 at 116.331 kb on + strand, within Dsui_0117 at 116.339 kb on - strand, within Dsui_0117 at 116.379 kb on + strand, within Dsui_0117 at 116.379 kb on + strand, within Dsui_0117 at 116.379 kb on + strand, within Dsui_0117 at 116.387 kb on - strand, within Dsui_0117 at 116.387 kb on - strand, within Dsui_0117 at 116.509 kb on + strand at 116.509 kb on + strand at 116.592 kb on + strand at 116.592 kb on + strand at 116.759 kb on - strand at 116.759 kb on - strand at 116.762 kb on + strand at 116.762 kb on + strand at 116.769 kb on - strand at 116.775 kb on - strand at 116.870 kb on + strand, within Dsui_0118 at 116.922 kb on - strand, within Dsui_0118 at 116.939 kb on + strand, within Dsui_0118 at 116.957 kb on - strand, within Dsui_0118 at 116.970 kb on - strand, within Dsui_0118 at 116.974 kb on - strand, within Dsui_0118 at 117.036 kb on - strand, within Dsui_0118 at 117.069 kb on + strand at 117.094 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 113,985 - +0.3 113,999 + +0.7 114,006 - Dsui_0115 0.11 +0.3 114,030 - Dsui_0115 0.15 +0.3 114,051 - Dsui_0115 0.20 -1.0 114,062 + Dsui_0115 0.22 -0.3 114,121 + Dsui_0115 0.34 -0.3 114,185 - Dsui_0115 0.47 -0.1 114,206 - Dsui_0115 0.51 +0.6 114,285 + Dsui_0115 0.67 -1.3 114,293 - Dsui_0115 0.68 -0.5 114,331 - Dsui_0115 0.76 +0.2 114,421 + -0.9 114,444 - -0.5 114,496 - -0.3 114,499 + -1.3 114,514 + +0.7 114,562 + +0.7 114,615 - -1.3 114,621 + +0.7 114,775 + Dsui_0116 0.58 +0.7 114,775 + Dsui_0116 0.58 +0.7 114,826 - Dsui_0116 0.72 -0.9 114,853 + Dsui_0116 0.80 -3.1 114,866 - +0.7 114,885 - Dsui_0116 0.89 +0.7 114,889 - -0.9 114,900 - -0.3 115,004 + -0.3 115,012 - -2.3 115,016 + -0.9 115,024 - -1.6 115,086 + +0.7 115,142 - Dsui_0117 0.11 -0.9 115,185 + Dsui_0117 0.13 +0.7 115,256 - Dsui_0117 0.18 -0.9 115,369 - Dsui_0117 0.24 +0.7 115,411 + Dsui_0117 0.27 +0.7 115,419 - Dsui_0117 0.27 +3.0 115,463 + Dsui_0117 0.30 -0.3 115,601 - Dsui_0117 0.39 +0.7 115,728 + +0.7 115,738 + -0.3 115,738 + Dsui_0117 0.47 +0.7 115,738 + Dsui_0117 0.47 -1.3 115,741 - +0.7 115,766 + Dsui_0117 0.49 -0.3 115,783 + Dsui_0117 0.50 -0.9 115,789 + Dsui_0117 0.50 -1.6 115,794 + Dsui_0117 0.50 -0.9 115,804 + Dsui_0117 0.51 -0.3 115,812 - Dsui_0117 0.51 -0.6 115,829 - Dsui_0117 0.52 -0.9 115,835 + Dsui_0117 0.53 -0.9 115,874 + Dsui_0117 0.55 -0.3 115,904 + Dsui_0117 0.57 -0.9 115,904 + Dsui_0117 0.57 +0.7 115,911 + Dsui_0117 0.57 -2.6 115,940 + Dsui_0117 0.59 -2.1 115,982 - Dsui_0117 0.62 -0.9 116,043 + Dsui_0117 0.65 +0.7 116,125 + -0.3 116,127 + +0.7 116,137 - Dsui_0117 0.71 -0.3 116,146 + Dsui_0117 0.72 -0.3 116,207 + Dsui_0117 0.75 -0.3 116,256 - Dsui_0117 0.78 -1.1 116,281 - Dsui_0117 0.80 -0.3 116,290 - Dsui_0117 0.80 -1.4 116,329 - Dsui_0117 0.83 +0.3 116,331 + Dsui_0117 0.83 +0.7 116,339 - Dsui_0117 0.83 +0.1 116,379 + Dsui_0117 0.86 +0.7 116,379 + Dsui_0117 0.86 +0.7 116,379 + Dsui_0117 0.86 +0.7 116,387 - Dsui_0117 0.86 -0.9 116,387 - Dsui_0117 0.86 -1.0 116,509 + -1.6 116,509 + -2.5 116,592 + -1.6 116,592 + +0.7 116,759 - +0.0 116,759 - +0.2 116,762 + -0.3 116,762 + -0.9 116,769 - +0.5 116,775 - -0.1 116,870 + Dsui_0118 0.33 -0.9 116,922 - Dsui_0118 0.49 -0.2 116,939 + Dsui_0118 0.55 -0.9 116,957 - Dsui_0118 0.60 -0.3 116,970 - Dsui_0118 0.64 -0.4 116,974 - Dsui_0118 0.65 +0.1 117,036 - Dsui_0118 0.85 -0.4 117,069 + -1.3 117,094 - -0.2
Or see this region's nucleotide sequence