Strain Fitness in Dechlorosoma suillum PS around Dsui_0088

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0087 and Dsui_0088 are separated by 178 nucleotidesDsui_0088 and Dsui_0089 are separated by 55 nucleotides Dsui_0087: Dsui_0087 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 85,418 to 86,854 _0087 Dsui_0088: Dsui_0088 - tRNA-Ala, at 87,033 to 87,108 _0088 Dsui_0089: Dsui_0089 - methyl-accepting chemotaxis protein, at 87,164 to 88,798 _0089 Position (kb) 87 88Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 86.184 kb on + strand, within Dsui_0087at 86.218 kb on + strand, within Dsui_0087at 86.284 kb on + strand, within Dsui_0087at 86.292 kb on - strand, within Dsui_0087at 86.394 kb on - strand, within Dsui_0087at 86.433 kb on - strand, within Dsui_0087at 86.455 kb on - strand, within Dsui_0087at 86.544 kb on - strand, within Dsui_0087at 86.554 kb on - strand, within Dsui_0087at 86.564 kb on - strand, within Dsui_0087at 86.584 kb on + strand, within Dsui_0087at 86.698 kb on + strandat 86.698 kb on + strand, within Dsui_0087at 86.801 kb on - strandat 86.825 kb on - strandat 86.833 kb on + strandat 86.879 kb on + strandat 86.919 kb on + strandat 86.929 kb on + strandat 86.929 kb on + strandat 86.937 kb on - strandat 86.973 kb on + strandat 87.016 kb on + strandat 87.017 kb on - strandat 87.021 kb on + strandat 87.040 kb on - strandat 87.040 kb on - strandat 87.056 kb on + strand, within Dsui_0088at 87.064 kb on - strand, within Dsui_0088at 87.087 kb on + strand, within Dsui_0088at 87.094 kb on - strand, within Dsui_0088at 87.136 kb on + strandat 87.136 kb on + strandat 87.136 kb on + strandat 87.136 kb on + strandat 87.136 kb on + strandat 87.136 kb on + strandat 87.144 kb on - strandat 87.144 kb on - strandat 87.180 kb on - strandat 87.237 kb on + strandat 87.250 kb on - strandat 87.278 kb on - strandat 87.284 kb on - strandat 87.323 kb on - strandat 87.330 kb on + strand, within Dsui_0089at 87.340 kb on + strand, within Dsui_0089at 87.343 kb on - strand, within Dsui_0089at 87.402 kb on + strand, within Dsui_0089at 87.490 kb on + strand, within Dsui_0089at 87.549 kb on - strand, within Dsui_0089at 87.564 kb on - strand, within Dsui_0089at 87.587 kb on - strand, within Dsui_0089at 87.768 kb on + strand, within Dsui_0089at 87.783 kb on + strand, within Dsui_0089at 87.818 kb on + strand, within Dsui_0089at 87.882 kb on - strand, within Dsui_0089at 87.882 kb on - strand, within Dsui_0089at 87.910 kb on - strand, within Dsui_0089at 87.910 kb on - strand, within Dsui_0089at 87.976 kb on + strand, within Dsui_0089at 87.990 kb on + strand, within Dsui_0089at 88.064 kb on + strand, within Dsui_0089at 88.067 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
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86,184 + Dsui_0087 0.53 +0.7
86,218 + Dsui_0087 0.56 -1.6
86,284 + Dsui_0087 0.60 -0.3
86,292 - Dsui_0087 0.61 -5.4
86,394 - Dsui_0087 0.68 -5.8
86,433 - Dsui_0087 0.71 -5.3
86,455 - Dsui_0087 0.72 -4.9
86,544 - Dsui_0087 0.78 -4.7
86,554 - Dsui_0087 0.79 -4.3
86,564 - Dsui_0087 0.80 -5.5
86,584 + Dsui_0087 0.81 -0.3
86,698 + +0.7
86,698 + Dsui_0087 0.89 +0.7
86,801 - -6.0
86,825 - -6.2
86,833 + -0.3
86,879 + -0.9
86,919 + -1.3
86,929 + -0.3
86,929 + +0.7
86,937 - +0.1
86,973 + -0.3
87,016 + -1.3
87,017 - +0.1
87,021 + +0.7
87,040 - +0.2
87,040 - +0.1
87,056 + Dsui_0088 0.30 +0.7
87,064 - Dsui_0088 0.41 +0.1
87,087 + Dsui_0088 0.71 -2.1
87,094 - Dsui_0088 0.80 -0.2
87,136 + +0.7
87,136 + -1.3
87,136 + -1.9
87,136 + -0.9
87,136 + +1.3
87,136 + +0.7
87,144 - -0.1
87,144 - +0.1
87,180 - -0.0
87,237 + -0.9
87,250 - +0.1
87,278 - -0.3
87,284 - -0.1
87,323 - +0.5
87,330 + Dsui_0089 0.10 -0.3
87,340 + Dsui_0089 0.11 -0.3
87,343 - Dsui_0089 0.11 -1.5
87,402 + Dsui_0089 0.15 +0.7
87,490 + Dsui_0089 0.20 +0.7
87,549 - Dsui_0089 0.24 -0.2
87,564 - Dsui_0089 0.24 -0.5
87,587 - Dsui_0089 0.26 +0.4
87,768 + Dsui_0089 0.37 -0.3
87,783 + Dsui_0089 0.38 -0.3
87,818 + Dsui_0089 0.40 -0.3
87,882 - Dsui_0089 0.44 -0.2
87,882 - Dsui_0089 0.44 -0.2
87,910 - Dsui_0089 0.46 -1.8
87,910 - Dsui_0089 0.46 -0.6
87,976 + Dsui_0089 0.50 +0.7
87,990 + Dsui_0089 0.51 -0.3
88,064 + Dsui_0089 0.55 -0.3
88,067 + +0.7

Or see this region's nucleotide sequence