Strain Fitness in Dechlorosoma suillum PS around Dsui_0059

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0057 and Dsui_0058 are separated by 7 nucleotidesDsui_0058 and Dsui_0059 overlap by 62 nucleotidesDsui_0059 and Dsui_0060 are separated by 3 nucleotidesDsui_0060 and Dsui_0061 overlap by 4 nucleotides Dsui_0057: Dsui_0057 - glycosyltransferase, at 54,298 to 55,488 _0057 Dsui_0058: Dsui_0058 - Glycosyl transferase family 11, at 55,496 to 56,431 _0058 Dsui_0059: Dsui_0059 - glycosyl transferase, at 56,370 to 57,104 _0059 Dsui_0060: Dsui_0060 - GDP-D-mannose dehydratase, at 57,108 to 58,082 _0060 Dsui_0061: Dsui_0061 - glycosyltransferase, at 58,079 to 59,182 _0061 Position (kb) 56 57 58Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 55.384 kb on - strandat 55.394 kb on - strandat 55.397 kb on + strandat 55.405 kb on - strandat 55.438 kb on - strandat 55.455 kb on - strandat 55.455 kb on - strandat 55.461 kb on + strandat 55.483 kb on + strandat 55.702 kb on + strand, within Dsui_0058at 55.727 kb on + strand, within Dsui_0058at 55.784 kb on + strand, within Dsui_0058at 55.792 kb on - strand, within Dsui_0058at 55.833 kb on + strand, within Dsui_0058at 55.856 kb on + strand, within Dsui_0058at 55.897 kb on - strand, within Dsui_0058at 55.935 kb on + strand, within Dsui_0058at 55.947 kb on - strand, within Dsui_0058at 55.964 kb on - strand, within Dsui_0058at 56.149 kb on - strand, within Dsui_0058at 56.159 kb on + strand, within Dsui_0058at 56.193 kb on - strand, within Dsui_0058at 56.250 kb on - strand, within Dsui_0058at 56.367 kb on + strandat 56.386 kb on - strandat 56.391 kb on + strandat 56.426 kb on - strandat 56.464 kb on + strand, within Dsui_0059at 56.677 kb on - strand, within Dsui_0059at 56.787 kb on - strand, within Dsui_0059at 56.860 kb on + strand, within Dsui_0059at 56.860 kb on + strand, within Dsui_0059at 56.860 kb on + strand, within Dsui_0059at 56.865 kb on + strand, within Dsui_0059at 56.865 kb on + strand, within Dsui_0059at 56.868 kb on - strand, within Dsui_0059at 56.868 kb on - strand, within Dsui_0059at 56.871 kb on + strand, within Dsui_0059at 56.873 kb on - strand, within Dsui_0059at 56.957 kb on + strand, within Dsui_0059at 57.007 kb on - strand, within Dsui_0059at 57.021 kb on + strand, within Dsui_0059at 57.041 kb on - strandat 57.106 kb on + strandat 57.119 kb on - strandat 57.132 kb on - strandat 57.137 kb on - strandat 57.139 kb on + strandat 57.147 kb on - strandat 57.147 kb on - strandat 57.183 kb on - strandat 57.275 kb on - strand, within Dsui_0060at 57.283 kb on - strand, within Dsui_0060at 57.297 kb on - strand, within Dsui_0060at 57.331 kb on + strand, within Dsui_0060at 57.420 kb on + strand, within Dsui_0060at 57.486 kb on + strand, within Dsui_0060at 57.539 kb on - strand, within Dsui_0060at 57.584 kb on + strand, within Dsui_0060at 57.590 kb on - strand, within Dsui_0060at 57.592 kb on - strand, within Dsui_0060at 57.681 kb on + strand, within Dsui_0060at 57.762 kb on - strand, within Dsui_0060at 57.764 kb on + strand, within Dsui_0060at 57.764 kb on + strand, within Dsui_0060at 57.772 kb on - strand, within Dsui_0060at 57.816 kb on + strand, within Dsui_0060at 57.829 kb on - strand, within Dsui_0060at 57.831 kb on + strand, within Dsui_0060at 57.831 kb on + strand, within Dsui_0060at 57.838 kb on - strand, within Dsui_0060at 57.863 kb on + strand, within Dsui_0060at 57.863 kb on + strand, within Dsui_0060at 57.882 kb on + strand, within Dsui_0060at 57.888 kb on - strand, within Dsui_0060at 57.903 kb on + strand, within Dsui_0060at 57.994 kb on + strandat 57.994 kb on + strandat 58.003 kb on + strandat 58.023 kb on - strandat 58.046 kb on - strandat 58.087 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
remove
55,384 - -3.4
55,394 - -4.0
55,397 + -0.3
55,405 - -4.9
55,438 - -4.2
55,455 - -5.6
55,455 - -4.0
55,461 + -0.3
55,483 + -1.3
55,702 + Dsui_0058 0.22 +0.7
55,727 + Dsui_0058 0.25 -4.3
55,784 + Dsui_0058 0.31 -0.3
55,792 - Dsui_0058 0.32 -5.2
55,833 + Dsui_0058 0.36 +0.7
55,856 + Dsui_0058 0.38 -0.9
55,897 - Dsui_0058 0.43 -5.1
55,935 + Dsui_0058 0.47 +0.7
55,947 - Dsui_0058 0.48 -3.9
55,964 - Dsui_0058 0.50 -1.7
56,149 - Dsui_0058 0.70 -3.4
56,159 + Dsui_0058 0.71 -0.9
56,193 - Dsui_0058 0.74 -4.1
56,250 - Dsui_0058 0.81 -6.4
56,367 + -0.3
56,386 - -0.4
56,391 + +0.7
56,426 - -3.6
56,464 + Dsui_0059 0.13 +0.7
56,677 - Dsui_0059 0.42 -4.8
56,787 - Dsui_0059 0.57 -2.5
56,860 + Dsui_0059 0.67 -0.3
56,860 + Dsui_0059 0.67 -0.3
56,860 + Dsui_0059 0.67 +0.7
56,865 + Dsui_0059 0.67 -0.9
56,865 + Dsui_0059 0.67 +0.7
56,868 - Dsui_0059 0.68 -5.6
56,868 - Dsui_0059 0.68 -4.9
56,871 + Dsui_0059 0.68 +0.7
56,873 - Dsui_0059 0.68 -6.0
56,957 + Dsui_0059 0.80 -1.9
57,007 - Dsui_0059 0.87 -5.1
57,021 + Dsui_0059 0.89 -0.3
57,041 - -4.7
57,106 + -0.3
57,119 - -0.2
57,132 - +0.1
57,137 - -0.3
57,139 + -1.6
57,147 - +0.3
57,147 - +1.0
57,183 - -2.8
57,275 - Dsui_0060 0.17 -3.6
57,283 - Dsui_0060 0.18 -3.2
57,297 - Dsui_0060 0.19 -3.5
57,331 + Dsui_0060 0.23 +0.7
57,420 + Dsui_0060 0.32 -0.3
57,486 + Dsui_0060 0.39 -0.3
57,539 - Dsui_0060 0.44 -3.4
57,584 + Dsui_0060 0.49 -0.3
57,590 - Dsui_0060 0.49 -2.3
57,592 - Dsui_0060 0.50 -3.5
57,681 + Dsui_0060 0.59 +0.7
57,762 - Dsui_0060 0.67 -2.9
57,764 + Dsui_0060 0.67 +0.7
57,764 + Dsui_0060 0.67 -1.3
57,772 - Dsui_0060 0.68 +1.3
57,816 + Dsui_0060 0.73 -0.9
57,829 - Dsui_0060 0.74 -2.7
57,831 + Dsui_0060 0.74 -0.3
57,831 + Dsui_0060 0.74 -0.3
57,838 - Dsui_0060 0.75 -2.5
57,863 + Dsui_0060 0.77 +0.7
57,863 + Dsui_0060 0.77 +0.7
57,882 + Dsui_0060 0.79 +0.7
57,888 - Dsui_0060 0.80 -3.3
57,903 + Dsui_0060 0.82 +0.7
57,994 + +0.7
57,994 + +0.7
58,003 + -0.3
58,023 - -3.3
58,046 - -1.4
58,087 + -0.3

Or see this region's nucleotide sequence