Strain Fitness in Dechlorosoma suillum PS around Dsui_0046

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0044 and Dsui_0045 are separated by 6 nucleotidesDsui_0045 and Dsui_0046 are separated by 34 nucleotidesDsui_0046 and Dsui_0047 are separated by 111 nucleotides Dsui_0044: Dsui_0044 - exodeoxyribonuclease III, at 40,231 to 41,004 _0044 Dsui_0045: Dsui_0045 - glutaredoxin-like protein, at 41,011 to 41,520 _0045 Dsui_0046: Dsui_0046 - Zn-dependent oligopeptidase, at 41,555 to 43,636 _0046 Dsui_0047: Dsui_0047 - putative integral membrane protein, at 43,748 to 44,518 _0047 Position (kb) 41 42 43 44Strain fitness (log2 ratio) -2 -1 0 1at 40.674 kb on + strand, within Dsui_0044at 40.783 kb on + strand, within Dsui_0044at 40.873 kb on - strand, within Dsui_0044at 41.000 kb on - strandat 41.027 kb on + strandat 41.094 kb on - strand, within Dsui_0045at 41.215 kb on + strand, within Dsui_0045at 41.274 kb on + strandat 41.279 kb on + strandat 41.324 kb on + strand, within Dsui_0045at 41.332 kb on - strand, within Dsui_0045at 41.403 kb on - strand, within Dsui_0045at 41.459 kb on + strand, within Dsui_0045at 41.467 kb on - strand, within Dsui_0045at 41.485 kb on - strandat 41.506 kb on - strandat 41.658 kb on + strandat 41.793 kb on + strand, within Dsui_0046at 41.825 kb on + strand, within Dsui_0046at 41.899 kb on - strand, within Dsui_0046at 41.947 kb on - strand, within Dsui_0046at 42.048 kb on + strandat 42.095 kb on - strand, within Dsui_0046at 42.159 kb on + strand, within Dsui_0046at 42.173 kb on - strand, within Dsui_0046at 42.245 kb on - strand, within Dsui_0046at 42.246 kb on - strand, within Dsui_0046at 42.383 kb on - strand, within Dsui_0046at 42.506 kb on + strand, within Dsui_0046at 42.513 kb on + strand, within Dsui_0046at 42.646 kb on - strand, within Dsui_0046at 42.679 kb on - strand, within Dsui_0046at 42.750 kb on + strandat 42.750 kb on + strand, within Dsui_0046at 42.760 kb on + strandat 42.813 kb on - strand, within Dsui_0046at 42.821 kb on + strand, within Dsui_0046at 42.834 kb on - strand, within Dsui_0046at 42.836 kb on + strand, within Dsui_0046at 42.896 kb on + strandat 42.981 kb on + strand, within Dsui_0046at 43.166 kb on - strand, within Dsui_0046at 43.272 kb on - strand, within Dsui_0046at 43.292 kb on - strand, within Dsui_0046at 43.292 kb on - strand, within Dsui_0046at 43.292 kb on - strand, within Dsui_0046at 43.311 kb on - strand, within Dsui_0046at 43.422 kb on + strandat 43.572 kb on - strandat 43.596 kb on - strandat 43.601 kb on - strandat 43.642 kb on + strandat 43.642 kb on + strandat 43.655 kb on - strandat 43.694 kb on + strandat 43.815 kb on - strandat 43.851 kb on - strand, within Dsui_0047at 43.851 kb on - strand, within Dsui_0047at 43.851 kb on - strand, within Dsui_0047at 43.874 kb on - strand, within Dsui_0047at 44.022 kb on - strand, within Dsui_0047at 44.184 kb on - strand, within Dsui_0047at 44.535 kb on + strandat 44.547 kb on + strandat 44.563 kb on + strandat 44.595 kb on + strandat 44.632 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
remove
40,674 + Dsui_0044 0.57 -0.3
40,783 + Dsui_0044 0.71 -1.3
40,873 - Dsui_0044 0.83 +0.2
41,000 - +0.1
41,027 + +0.7
41,094 - Dsui_0045 0.16 +0.0
41,215 + Dsui_0045 0.40 -1.6
41,274 + +0.7
41,279 + +0.7
41,324 + Dsui_0045 0.61 -2.1
41,332 - Dsui_0045 0.63 -0.0
41,403 - Dsui_0045 0.77 +0.4
41,459 + Dsui_0045 0.88 -1.6
41,467 - Dsui_0045 0.89 +0.1
41,485 - +0.1
41,506 - -0.1
41,658 + -1.3
41,793 + Dsui_0046 0.11 -0.3
41,825 + Dsui_0046 0.13 -0.3
41,899 - Dsui_0046 0.17 +0.1
41,947 - Dsui_0046 0.19 -0.0
42,048 + +0.7
42,095 - Dsui_0046 0.26 +0.3
42,159 + Dsui_0046 0.29 -0.3
42,173 - Dsui_0046 0.30 +0.2
42,245 - Dsui_0046 0.33 +0.6
42,246 - Dsui_0046 0.33 +0.3
42,383 - Dsui_0046 0.40 +0.4
42,506 + Dsui_0046 0.46 -2.6
42,513 + Dsui_0046 0.46 +0.7
42,646 - Dsui_0046 0.52 +0.2
42,679 - Dsui_0046 0.54 +0.2
42,750 + -0.3
42,750 + Dsui_0046 0.57 -0.9
42,760 + +0.7
42,813 - Dsui_0046 0.60 -0.2
42,821 + Dsui_0046 0.61 -0.9
42,834 - Dsui_0046 0.61 +0.5
42,836 + Dsui_0046 0.62 +0.7
42,896 + +0.7
42,981 + Dsui_0046 0.68 +0.7
43,166 - Dsui_0046 0.77 -0.1
43,272 - Dsui_0046 0.82 +0.6
43,292 - Dsui_0046 0.83 +0.1
43,292 - Dsui_0046 0.83 +0.6
43,292 - Dsui_0046 0.83 +0.0
43,311 - Dsui_0046 0.84 -0.1
43,422 + +0.7
43,572 - +0.2
43,596 - +0.4
43,601 - +0.1
43,642 + -0.9
43,642 + +0.7
43,655 - +0.0
43,694 + +0.7
43,815 - -0.7
43,851 - Dsui_0047 0.13 -0.1
43,851 - Dsui_0047 0.13 -0.0
43,851 - Dsui_0047 0.13 -0.6
43,874 - Dsui_0047 0.16 -0.1
44,022 - Dsui_0047 0.36 -0.2
44,184 - Dsui_0047 0.57 +0.1
44,535 + +0.7
44,547 + +0.7
44,563 + +0.7
44,595 + +0.7
44,632 - +0.0

Or see this region's nucleotide sequence