Strain Fitness in Dechlorosoma suillum PS around Dsui_0037

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0035 and Dsui_0036 are separated by 115 nucleotidesDsui_0036 and Dsui_0037 are separated by 86 nucleotidesDsui_0037 and Dsui_0038 are separated by 85 nucleotidesDsui_0038 and Dsui_0039 are separated by 102 nucleotides Dsui_0035: Dsui_0035 - ankyrin repeat-containing protein, at 31,805 to 32,854 _0035 Dsui_0036: Dsui_0036 - TonB family protein, at 32,970 to 33,542 _0036 Dsui_0037: Dsui_0037 - putative acyl-CoA transferase/carnitine dehydratase, at 33,629 to 34,840 _0037 Dsui_0038: Dsui_0038 - HIT family hydrolase, diadenosine tetraphosphate hydrolase, at 34,926 to 35,336 _0038 Dsui_0039: Dsui_0039 - dimethyladenosine transferase, at 35,439 to 36,215 _0039 Position (kb) 33 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 32.660 kb on + strandat 32.671 kb on + strandat 32.671 kb on + strandat 32.758 kb on - strandat 32.834 kb on - strandat 33.188 kb on + strand, within Dsui_0036at 33.188 kb on + strand, within Dsui_0036at 33.261 kb on - strand, within Dsui_0036at 33.273 kb on - strand, within Dsui_0036at 33.332 kb on + strand, within Dsui_0036at 33.353 kb on - strand, within Dsui_0036at 33.551 kb on + strandat 33.559 kb on - strandat 33.671 kb on + strandat 33.715 kb on + strandat 33.786 kb on - strand, within Dsui_0037at 33.851 kb on + strandat 33.871 kb on + strand, within Dsui_0037at 33.895 kb on + strandat 33.918 kb on + strand, within Dsui_0037at 33.930 kb on - strand, within Dsui_0037at 33.962 kb on - strand, within Dsui_0037at 34.171 kb on - strand, within Dsui_0037at 34.182 kb on + strand, within Dsui_0037at 34.190 kb on + strand, within Dsui_0037at 34.225 kb on - strand, within Dsui_0037at 34.225 kb on - strand, within Dsui_0037at 34.237 kb on - strand, within Dsui_0037at 34.238 kb on - strand, within Dsui_0037at 34.242 kb on + strand, within Dsui_0037at 34.275 kb on + strand, within Dsui_0037at 34.297 kb on + strand, within Dsui_0037at 34.306 kb on - strandat 34.428 kb on + strand, within Dsui_0037at 34.436 kb on - strand, within Dsui_0037at 34.461 kb on - strand, within Dsui_0037at 34.476 kb on - strand, within Dsui_0037at 34.482 kb on - strand, within Dsui_0037at 34.611 kb on + strandat 34.721 kb on - strandat 34.761 kb on - strandat 34.810 kb on - strandat 34.860 kb on - strandat 34.876 kb on + strandat 34.890 kb on + strandat 34.890 kb on + strandat 34.890 kb on + strandat 34.890 kb on + strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.923 kb on + strandat 34.923 kb on + strandat 34.931 kb on - strandat 34.972 kb on + strand, within Dsui_0038at 34.972 kb on + strand, within Dsui_0038at 35.019 kb on + strand, within Dsui_0038at 35.027 kb on - strandat 35.139 kb on + strand, within Dsui_0038at 35.149 kb on + strand, within Dsui_0038at 35.155 kb on + strand, within Dsui_0038at 35.259 kb on + strand, within Dsui_0038at 35.413 kb on - strandat 35.466 kb on + strandat 35.554 kb on + strand, within Dsui_0039at 35.714 kb on + strand, within Dsui_0039at 35.794 kb on + strand, within Dsui_0039at 35.802 kb on + strand, within Dsui_0039

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
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32,660 + -1.3
32,671 + +0.7
32,671 + -1.3
32,758 - +2.3
32,834 - -2.6
33,188 + Dsui_0036 0.38 -0.8
33,188 + Dsui_0036 0.38 -1.2
33,261 - Dsui_0036 0.51 +0.1
33,273 - Dsui_0036 0.53 -0.9
33,332 + Dsui_0036 0.63 -0.9
33,353 - Dsui_0036 0.67 -1.8
33,551 + +0.7
33,559 - -0.1
33,671 + -0.3
33,715 + +0.7
33,786 - Dsui_0037 0.13 -1.6
33,851 + +0.7
33,871 + Dsui_0037 0.20 -2.5
33,895 + +0.7
33,918 + Dsui_0037 0.24 -0.3
33,930 - Dsui_0037 0.25 -1.1
33,962 - Dsui_0037 0.27 -0.6
34,171 - Dsui_0037 0.45 -2.9
34,182 + Dsui_0037 0.46 -3.1
34,190 + Dsui_0037 0.46 -2.1
34,225 - Dsui_0037 0.49 +0.7
34,225 - Dsui_0037 0.49 +0.7
34,237 - Dsui_0037 0.50 -0.3
34,238 - Dsui_0037 0.50 -2.1
34,242 + Dsui_0037 0.51 -1.3
34,275 + Dsui_0037 0.53 -1.3
34,297 + Dsui_0037 0.55 -0.3
34,306 - +0.7
34,428 + Dsui_0037 0.66 -0.9
34,436 - Dsui_0037 0.67 +0.7
34,461 - Dsui_0037 0.69 -0.3
34,476 - Dsui_0037 0.70 -1.6
34,482 - Dsui_0037 0.70 -0.1
34,611 + +0.7
34,721 - -0.3
34,761 - +0.7
34,810 - +1.3
34,860 - -1.9
34,876 + -1.3
34,890 + -2.1
34,890 + -1.9
34,890 + +0.7
34,890 + +0.7
34,898 - -0.3
34,898 - +0.7
34,898 - +0.7
34,898 - -1.3
34,898 - +0.7
34,898 - +0.7
34,923 + -0.0
34,923 + -0.0
34,931 - -0.3
34,972 + Dsui_0038 0.11 -0.6
34,972 + Dsui_0038 0.11 -0.1
35,019 + Dsui_0038 0.23 -0.0
35,027 - +0.7
35,139 + Dsui_0038 0.52 -0.0
35,149 + Dsui_0038 0.54 +0.1
35,155 + Dsui_0038 0.56 +0.2
35,259 + Dsui_0038 0.81 -0.0
35,413 - -0.3
35,466 + -0.6
35,554 + Dsui_0039 0.15 -0.2
35,714 + Dsui_0039 0.35 +0.5
35,794 + Dsui_0039 0.46 -0.2
35,802 + Dsui_0039 0.47 +0.2

Or see this region's nucleotide sequence