Experiment: L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS20075 and AZOBR_RS20080 are separated by 333 nucleotides AZOBR_RS20080 and AZOBR_RS20085 overlap by 4 nucleotides AZOBR_RS20085 and AZOBR_RS20090 are separated by 48 nucleotides AZOBR_RS20090 and AZOBR_RS20095 are separated by 54 nucleotides
AZOBR_RS20075: AZOBR_RS20075 - hypothetical protein, at 1,268,481 to 1,269,125
_RS20075
AZOBR_RS20080: AZOBR_RS20080 - ATPase, at 1,269,459 to 1,272,224
_RS20080
AZOBR_RS20085: AZOBR_RS20085 - chemotaxis protein CheW, at 1,272,221 to 1,272,721
_RS20085
AZOBR_RS20090: AZOBR_RS20090 - chemotaxis protein CheY, at 1,272,770 to 1,273,135
_RS20090
AZOBR_RS20095: AZOBR_RS20095 - chemotaxis protein CheY, at 1,273,190 to 1,274,374
_RS20095
Position (kb) 1269
1270
1271
1272
1273 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1269.231 kb on + strand at 1269.231 kb on + strand at 1269.232 kb on - strand at 1269.232 kb on - strand at 1269.232 kb on - strand at 1269.232 kb on - strand at 1269.324 kb on + strand at 1269.324 kb on + strand at 1269.324 kb on + strand at 1269.325 kb on - strand at 1269.325 kb on - strand at 1269.325 kb on - strand at 1269.335 kb on + strand at 1269.362 kb on + strand at 1269.432 kb on + strand at 1269.433 kb on - strand at 1270.602 kb on + strand, within AZOBR_RS20080 at 1270.898 kb on + strand, within AZOBR_RS20080 at 1271.172 kb on + strand, within AZOBR_RS20080 at 1271.172 kb on + strand at 1271.173 kb on - strand, within AZOBR_RS20080 at 1271.173 kb on - strand, within AZOBR_RS20080 at 1271.173 kb on - strand, within AZOBR_RS20080 at 1271.787 kb on + strand, within AZOBR_RS20080 at 1271.788 kb on - strand, within AZOBR_RS20080 at 1271.788 kb on - strand, within AZOBR_RS20080 at 1271.788 kb on - strand, within AZOBR_RS20080 at 1271.788 kb on - strand, within AZOBR_RS20080 at 1271.823 kb on + strand, within AZOBR_RS20080 at 1271.916 kb on + strand, within AZOBR_RS20080 at 1271.917 kb on - strand, within AZOBR_RS20080 at 1272.147 kb on + strand at 1272.147 kb on + strand at 1272.148 kb on - strand at 1272.148 kb on - strand at 1272.148 kb on - strand at 1272.296 kb on + strand, within AZOBR_RS20085 at 1272.296 kb on + strand, within AZOBR_RS20085 at 1272.296 kb on + strand, within AZOBR_RS20085 at 1272.297 kb on - strand, within AZOBR_RS20085 at 1272.297 kb on - strand, within AZOBR_RS20085 at 1272.534 kb on - strand, within AZOBR_RS20085 at 1273.070 kb on + strand, within AZOBR_RS20090 at 1273.070 kb on + strand, within AZOBR_RS20090 at 1273.071 kb on - strand, within AZOBR_RS20090 at 1273.071 kb on - strand, within AZOBR_RS20090
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days remove 1,269,231 + -1.0 1,269,231 + -1.6 1,269,232 - +0.6 1,269,232 - +0.5 1,269,232 - +0.4 1,269,232 - +0.5 1,269,324 + -0.6 1,269,324 + -0.8 1,269,324 + -0.3 1,269,325 - -0.4 1,269,325 - -1.2 1,269,325 - +0.6 1,269,335 + -1.8 1,269,362 + -1.1 1,269,432 + -0.9 1,269,433 - -3.9 1,270,602 + AZOBR_RS20080 0.41 -3.0 1,270,898 + AZOBR_RS20080 0.52 -2.9 1,271,172 + AZOBR_RS20080 0.62 -2.1 1,271,172 + -2.3 1,271,173 - AZOBR_RS20080 0.62 -0.9 1,271,173 - AZOBR_RS20080 0.62 -3.7 1,271,173 - AZOBR_RS20080 0.62 -0.6 1,271,787 + AZOBR_RS20080 0.84 -3.3 1,271,788 - AZOBR_RS20080 0.84 -4.0 1,271,788 - AZOBR_RS20080 0.84 -2.3 1,271,788 - AZOBR_RS20080 0.84 -3.1 1,271,788 - AZOBR_RS20080 0.84 -2.1 1,271,823 + AZOBR_RS20080 0.85 -2.3 1,271,916 + AZOBR_RS20080 0.89 -0.4 1,271,917 - AZOBR_RS20080 0.89 -3.8 1,272,147 + -1.9 1,272,147 + -2.9 1,272,148 - -1.0 1,272,148 - -2.7 1,272,148 - -2.8 1,272,296 + AZOBR_RS20085 0.15 -2.7 1,272,296 + AZOBR_RS20085 0.15 -3.0 1,272,296 + AZOBR_RS20085 0.15 -3.8 1,272,297 - AZOBR_RS20085 0.15 -2.3 1,272,297 - AZOBR_RS20085 0.15 -4.1 1,272,534 - AZOBR_RS20085 0.62 -3.6 1,273,070 + AZOBR_RS20090 0.82 +0.2 1,273,070 + AZOBR_RS20090 0.82 -2.7 1,273,071 - AZOBR_RS20090 0.82 -3.3 1,273,071 - AZOBR_RS20090 0.82 -2.4
Or see this region's nucleotide sequence