Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06575

Experiment: L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06570 and AZOBR_RS06575 are separated by 176 nucleotidesAZOBR_RS06575 and AZOBR_RS06580 are separated by 183 nucleotides AZOBR_RS06570: AZOBR_RS06570 - ketol-acid reductoisomerase, at 1,391,629 to 1,392,648 _RS06570 AZOBR_RS06575: AZOBR_RS06575 - PhoU family transcriptional regulator, at 1,392,825 to 1,393,529 _RS06575 AZOBR_RS06580: AZOBR_RS06580 - hypothetical protein, at 1,393,713 to 1,394,255 _RS06580 Position (kb) 1392 1393 1394Strain fitness (log2 ratio) -2 -1 0 1at 1393.033 kb on + strand, within AZOBR_RS06575at 1393.033 kb on + strand, within AZOBR_RS06575at 1393.033 kb on + strand, within AZOBR_RS06575at 1393.099 kb on + strand, within AZOBR_RS06575at 1393.099 kb on + strand, within AZOBR_RS06575at 1393.099 kb on + strand, within AZOBR_RS06575at 1393.099 kb on + strand, within AZOBR_RS06575at 1393.100 kb on - strand, within AZOBR_RS06575at 1393.100 kb on - strand, within AZOBR_RS06575at 1393.100 kb on - strand, within AZOBR_RS06575at 1393.345 kb on + strand, within AZOBR_RS06575at 1393.345 kb on + strand, within AZOBR_RS06575at 1393.345 kb on + strand, within AZOBR_RS06575at 1393.345 kb on + strand, within AZOBR_RS06575at 1393.345 kb on + strand, within AZOBR_RS06575at 1393.346 kb on - strand, within AZOBR_RS06575at 1393.346 kb on - strand, within AZOBR_RS06575at 1393.346 kb on - strand, within AZOBR_RS06575at 1393.686 kb on + strandat 1393.686 kb on + strandat 1393.686 kb on + strandat 1393.773 kb on + strand, within AZOBR_RS06580at 1393.773 kb on + strand, within AZOBR_RS06580at 1393.773 kb on + strand, within AZOBR_RS06580at 1393.773 kb on + strand, within AZOBR_RS06580at 1393.774 kb on - strand, within AZOBR_RS06580at 1394.339 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
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1,393,033 + AZOBR_RS06575 0.30 +0.4
1,393,033 + AZOBR_RS06575 0.30 -0.1
1,393,033 + AZOBR_RS06575 0.30 -0.3
1,393,099 + AZOBR_RS06575 0.39 -0.6
1,393,099 + AZOBR_RS06575 0.39 -0.9
1,393,099 + AZOBR_RS06575 0.39 -0.4
1,393,099 + AZOBR_RS06575 0.39 +0.0
1,393,100 - AZOBR_RS06575 0.39 -1.4
1,393,100 - AZOBR_RS06575 0.39 -1.9
1,393,100 - AZOBR_RS06575 0.39 +0.3
1,393,345 + AZOBR_RS06575 0.74 +0.5
1,393,345 + AZOBR_RS06575 0.74 +1.0
1,393,345 + AZOBR_RS06575 0.74 -0.9
1,393,345 + AZOBR_RS06575 0.74 -0.6
1,393,345 + AZOBR_RS06575 0.74 -0.7
1,393,346 - AZOBR_RS06575 0.74 +0.6
1,393,346 - AZOBR_RS06575 0.74 +0.3
1,393,346 - AZOBR_RS06575 0.74 +0.2
1,393,686 + +0.0
1,393,686 + -0.1
1,393,686 + -0.6
1,393,773 + AZOBR_RS06580 0.11 +0.0
1,393,773 + AZOBR_RS06580 0.11 -0.4
1,393,773 + AZOBR_RS06580 0.11 -0.2
1,393,773 + AZOBR_RS06580 0.11 +0.4
1,393,774 - AZOBR_RS06580 0.11 -0.8
1,394,339 + +0.4

Or see this region's nucleotide sequence