Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05185

Experiment: L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05175 and AZOBR_RS05180 are separated by 8 nucleotidesAZOBR_RS05180 and AZOBR_RS05185 are separated by 455 nucleotidesAZOBR_RS05185 and AZOBR_RS05190 are separated by 268 nucleotides AZOBR_RS05175: AZOBR_RS05175 - ATP-dependent Clp protease ATP-binding protein, at 1,100,949 to 1,103,264 _RS05175 AZOBR_RS05180: AZOBR_RS05180 - Clp protease ClpS, at 1,103,273 to 1,103,599 _RS05180 AZOBR_RS05185: AZOBR_RS05185 - hypothetical protein, at 1,104,055 to 1,104,540 _RS05185 AZOBR_RS05190: AZOBR_RS05190 - hypothetical protein, at 1,104,809 to 1,105,336 _RS05190 Position (kb) 1104 1105Strain fitness (log2 ratio) -3 -2 -1 0 1at 1103.084 kb on - strandat 1103.194 kb on + strandat 1103.563 kb on + strand, within AZOBR_RS05180at 1103.626 kb on + strandat 1103.812 kb on + strandat 1103.812 kb on + strandat 1103.812 kb on + strandat 1103.812 kb on + strandat 1103.813 kb on - strandat 1103.813 kb on - strandat 1103.903 kb on + strandat 1104.672 kb on + strandat 1104.954 kb on + strand, within AZOBR_RS05190at 1104.954 kb on + strand, within AZOBR_RS05190at 1104.954 kb on + strand, within AZOBR_RS05190at 1104.954 kb on + strand, within AZOBR_RS05190at 1104.955 kb on - strand, within AZOBR_RS05190at 1105.048 kb on - strand, within AZOBR_RS05190at 1105.540 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
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1,103,084 - -1.5
1,103,194 + -1.6
1,103,563 + AZOBR_RS05180 0.89 -1.3
1,103,626 + -0.3
1,103,812 + -0.2
1,103,812 + -0.6
1,103,812 + +0.0
1,103,812 + +0.1
1,103,813 - -0.1
1,103,813 - -1.7
1,103,903 + +0.5
1,104,672 + +1.1
1,104,954 + AZOBR_RS05190 0.27 +0.4
1,104,954 + AZOBR_RS05190 0.27 -0.6
1,104,954 + AZOBR_RS05190 0.27 +0.5
1,104,954 + AZOBR_RS05190 0.27 -0.5
1,104,955 - AZOBR_RS05190 0.28 -3.1
1,105,048 - AZOBR_RS05190 0.45 -0.9
1,105,540 - +1.5

Or see this region's nucleotide sequence