Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01995

Experiment: L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01985 and AZOBR_RS01990 overlap by 4 nucleotidesAZOBR_RS01990 and AZOBR_RS01995 are separated by 48 nucleotidesAZOBR_RS01995 and AZOBR_RS02000 are separated by 25 nucleotides AZOBR_RS01985: AZOBR_RS01985 - glycosyl transferase group 1, at 407,455 to 408,726 _RS01985 AZOBR_RS01990: AZOBR_RS01990 - phosphoglycerate mutase, at 408,723 to 409,307 _RS01990 AZOBR_RS01995: AZOBR_RS01995 - exodeoxyribonuclease III, at 409,356 to 410,150 _RS01995 AZOBR_RS02000: AZOBR_RS02000 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 410,176 to 410,859 _RS02000 Position (kb) 409 410 411Strain fitness (log2 ratio) -2 -1 0 1 2at 408.395 kb on - strand, within AZOBR_RS01985at 408.439 kb on + strand, within AZOBR_RS01985at 408.440 kb on - strand, within AZOBR_RS01985at 408.440 kb on - strand, within AZOBR_RS01985at 408.864 kb on + strand, within AZOBR_RS01990at 409.170 kb on + strand, within AZOBR_RS01990at 409.525 kb on + strand, within AZOBR_RS01995at 409.837 kb on + strandat 409.837 kb on + strand, within AZOBR_RS01995at 409.837 kb on + strand, within AZOBR_RS01995at 409.838 kb on - strand, within AZOBR_RS01995at 409.838 kb on - strand, within AZOBR_RS01995at 409.963 kb on + strand, within AZOBR_RS01995at 409.963 kb on + strand, within AZOBR_RS01995at 409.964 kb on - strand, within AZOBR_RS01995at 409.964 kb on - strand, within AZOBR_RS01995at 409.964 kb on - strand, within AZOBR_RS01995at 409.996 kb on + strand, within AZOBR_RS01995at 409.996 kb on + strand, within AZOBR_RS01995at 409.996 kb on + strand, within AZOBR_RS01995at 409.997 kb on - strand, within AZOBR_RS01995at 410.166 kb on - strandat 410.166 kb on - strandat 410.273 kb on + strand, within AZOBR_RS02000at 410.274 kb on - strand, within AZOBR_RS02000at 410.274 kb on - strand, within AZOBR_RS02000at 410.549 kb on + strand, within AZOBR_RS02000at 410.555 kb on + strand, within AZOBR_RS02000at 410.555 kb on + strand, within AZOBR_RS02000at 410.556 kb on - strand, within AZOBR_RS02000at 410.556 kb on - strand, within AZOBR_RS02000at 410.556 kb on - strand, within AZOBR_RS02000at 410.556 kb on - strand, within AZOBR_RS02000at 410.657 kb on + strand, within AZOBR_RS02000at 410.763 kb on - strand, within AZOBR_RS02000at 410.780 kb on + strand, within AZOBR_RS02000at 410.780 kb on + strand, within AZOBR_RS02000at 410.780 kb on + strand, within AZOBR_RS02000at 410.780 kb on + strand, within AZOBR_RS02000at 410.781 kb on - strand, within AZOBR_RS02000at 410.781 kb on - strand, within AZOBR_RS02000at 410.852 kb on + strandat 411.100 kb on + strandat 411.100 kb on + strandat 411.101 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
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408,395 - AZOBR_RS01985 0.74 -0.2
408,439 + AZOBR_RS01985 0.77 +0.7
408,440 - AZOBR_RS01985 0.77 +0.4
408,440 - AZOBR_RS01985 0.77 +1.0
408,864 + AZOBR_RS01990 0.24 -2.5
409,170 + AZOBR_RS01990 0.76 +0.0
409,525 + AZOBR_RS01995 0.21 -1.9
409,837 + +0.3
409,837 + AZOBR_RS01995 0.61 -0.2
409,837 + AZOBR_RS01995 0.61 -0.1
409,838 - AZOBR_RS01995 0.61 +0.9
409,838 - AZOBR_RS01995 0.61 +0.5
409,963 + AZOBR_RS01995 0.76 +0.2
409,963 + AZOBR_RS01995 0.76 +0.3
409,964 - AZOBR_RS01995 0.76 -0.6
409,964 - AZOBR_RS01995 0.76 +0.9
409,964 - AZOBR_RS01995 0.76 -0.1
409,996 + AZOBR_RS01995 0.81 +1.2
409,996 + AZOBR_RS01995 0.81 +0.1
409,996 + AZOBR_RS01995 0.81 +0.3
409,997 - AZOBR_RS01995 0.81 +1.3
410,166 - +0.7
410,166 - +1.9
410,273 + AZOBR_RS02000 0.14 -0.5
410,274 - AZOBR_RS02000 0.14 -0.3
410,274 - AZOBR_RS02000 0.14 +0.9
410,549 + AZOBR_RS02000 0.55 -1.6
410,555 + AZOBR_RS02000 0.55 -1.2
410,555 + AZOBR_RS02000 0.55 -0.1
410,556 - AZOBR_RS02000 0.56 -0.2
410,556 - AZOBR_RS02000 0.56 -0.6
410,556 - AZOBR_RS02000 0.56 +0.6
410,556 - AZOBR_RS02000 0.56 +0.5
410,657 + AZOBR_RS02000 0.70 +0.0
410,763 - AZOBR_RS02000 0.86 +0.4
410,780 + AZOBR_RS02000 0.88 -0.2
410,780 + AZOBR_RS02000 0.88 -1.4
410,780 + AZOBR_RS02000 0.88 +0.1
410,780 + AZOBR_RS02000 0.88 +0.1
410,781 - AZOBR_RS02000 0.88 -0.4
410,781 - AZOBR_RS02000 0.88 +0.0
410,852 + -0.6
411,100 + +0.1
411,100 + +0.4
411,101 - +0.3

Or see this region's nucleotide sequence