Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25645

Experiment: L-Citrulline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_25635 and AO353_25640 are separated by 328 nucleotidesAO353_25640 and AO353_25645 are separated by 12 nucleotidesAO353_25645 and AO353_25650 are separated by 76 nucleotidesAO353_25650 and AO353_25655 overlap by 4 nucleotides AO353_25635: AO353_25635 - citrulline utilization hydrolase (from data), at 5,654,379 to 5,655,314 _25635 AO353_25640: AO353_25640 - AsnC family transcriptional regulator, at 5,655,643 to 5,656,119 _25640 AO353_25645: AO353_25645 - amino acid transporter, at 5,656,132 to 5,656,893 _25645 AO353_25650: AO353_25650 - amino acid ABC transporter permease, at 5,656,970 to 5,657,680 _25650 AO353_25655: AO353_25655 - amino acid ABC transporter permease, at 5,657,677 to 5,658,438 _25655 Position (kb) 5656 5657Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5655.172 kb on + strand, within AO353_25635at 5655.172 kb on + strand, within AO353_25635at 5655.173 kb on - strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.205 kb on - strand, within AO353_25635at 5655.383 kb on - strandat 5655.449 kb on + strandat 5655.449 kb on + strandat 5655.450 kb on - strandat 5655.477 kb on - strandat 5655.517 kb on - strandat 5655.564 kb on - strandat 5655.644 kb on + strandat 5655.644 kb on + strandat 5655.645 kb on - strandat 5655.645 kb on - strandat 5655.645 kb on - strandat 5655.645 kb on - strandat 5655.776 kb on + strand, within AO353_25640at 5655.777 kb on - strand, within AO353_25640at 5655.895 kb on + strand, within AO353_25640at 5656.031 kb on + strand, within AO353_25640at 5656.031 kb on + strand, within AO353_25640at 5656.031 kb on + strand, within AO353_25640at 5656.081 kb on - strandat 5656.101 kb on + strandat 5656.121 kb on + strandat 5656.121 kb on + strandat 5656.122 kb on - strandat 5656.122 kb on - strandat 5656.122 kb on - strandat 5656.122 kb on - strandat 5656.122 kb on - strandat 5656.122 kb on - strandat 5656.122 kb on - strandat 5656.162 kb on + strandat 5656.330 kb on + strand, within AO353_25645at 5656.330 kb on + strand, within AO353_25645at 5656.330 kb on + strand, within AO353_25645at 5656.330 kb on + strand, within AO353_25645at 5656.330 kb on + strand, within AO353_25645at 5656.331 kb on - strand, within AO353_25645at 5656.331 kb on - strand, within AO353_25645at 5656.331 kb on - strand, within AO353_25645at 5656.500 kb on - strand, within AO353_25645at 5656.750 kb on - strand, within AO353_25645at 5656.750 kb on - strand, within AO353_25645at 5656.750 kb on - strand, within AO353_25645at 5656.761 kb on + strand, within AO353_25645at 5656.761 kb on + strand, within AO353_25645at 5656.761 kb on + strand, within AO353_25645at 5656.761 kb on + strand, within AO353_25645at 5656.762 kb on - strand, within AO353_25645at 5656.762 kb on - strand, within AO353_25645at 5656.762 kb on - strand, within AO353_25645at 5656.762 kb on - strand, within AO353_25645at 5656.762 kb on - strand, within AO353_25645at 5656.762 kb on - strand, within AO353_25645at 5656.840 kb on + strandat 5656.840 kb on + strandat 5656.840 kb on + strandat 5656.840 kb on + strandat 5656.840 kb on + strandat 5656.840 kb on + strandat 5656.840 kb on + strandat 5656.841 kb on - strandat 5656.841 kb on - strandat 5656.841 kb on - strandat 5656.841 kb on - strandat 5656.841 kb on - strandat 5656.863 kb on + strandat 5656.863 kb on + strandat 5656.864 kb on - strandat 5656.864 kb on - strandat 5656.864 kb on - strandat 5656.864 kb on - strandat 5656.865 kb on + strandat 5656.865 kb on + strandat 5656.865 kb on + strandat 5656.866 kb on - strandat 5656.890 kb on - strandat 5656.890 kb on - strandat 5656.890 kb on - strandat 5657.053 kb on - strand, within AO353_25650at 5657.193 kb on + strand, within AO353_25650at 5657.193 kb on + strand, within AO353_25650at 5657.193 kb on + strand, within AO353_25650at 5657.193 kb on + strand, within AO353_25650at 5657.193 kb on + strand, within AO353_25650at 5657.193 kb on + strand, within AO353_25650at 5657.194 kb on - strand, within AO353_25650at 5657.194 kb on - strand, within AO353_25650at 5657.194 kb on - strand, within AO353_25650at 5657.194 kb on - strand, within AO353_25650at 5657.196 kb on + strand, within AO353_25650at 5657.197 kb on - strand, within AO353_25650at 5657.197 kb on - strand, within AO353_25650at 5657.241 kb on + strand, within AO353_25650at 5657.241 kb on + strand, within AO353_25650at 5657.241 kb on + strand, within AO353_25650at 5657.242 kb on - strand, within AO353_25650at 5657.242 kb on - strand, within AO353_25650at 5657.242 kb on - strand, within AO353_25650at 5657.265 kb on + strand, within AO353_25650at 5657.266 kb on - strand, within AO353_25650at 5657.266 kb on - strand, within AO353_25650at 5657.334 kb on + strand, within AO353_25650at 5657.334 kb on + strand, within AO353_25650at 5657.335 kb on - strandat 5657.335 kb on - strand, within AO353_25650at 5657.434 kb on - strand, within AO353_25650at 5657.466 kb on + strand, within AO353_25650at 5657.466 kb on + strand, within AO353_25650at 5657.466 kb on + strand, within AO353_25650at 5657.466 kb on + strand, within AO353_25650at 5657.466 kb on + strandat 5657.466 kb on + strand, within AO353_25650at 5657.466 kb on + strand, within AO353_25650at 5657.466 kb on + strand, within AO353_25650at 5657.466 kb on + strand, within AO353_25650at 5657.467 kb on - strand, within AO353_25650at 5657.467 kb on - strand, within AO353_25650at 5657.467 kb on - strand, within AO353_25650at 5657.467 kb on - strand, within AO353_25650at 5657.467 kb on - strand, within AO353_25650at 5657.467 kb on - strand, within AO353_25650at 5657.467 kb on - strand, within AO353_25650at 5657.467 kb on - strand, within AO353_25650at 5657.490 kb on + strand, within AO353_25650at 5657.491 kb on - strand, within AO353_25650at 5657.491 kb on - strand, within AO353_25650at 5657.491 kb on - strand, within AO353_25650at 5657.601 kb on - strand, within AO353_25650at 5657.628 kb on + strandat 5657.628 kb on + strandat 5657.629 kb on - strandat 5657.709 kb on - strandat 5657.735 kb on + strandat 5657.735 kb on + strandat 5657.735 kb on + strandat 5657.735 kb on + strandat 5657.735 kb on + strandat 5657.735 kb on + strandat 5657.736 kb on - strandat 5657.736 kb on - strandat 5657.763 kb on - strand, within AO353_25655

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
remove
5,655,172 + AO353_25635 0.85 -1.4
5,655,172 + AO353_25635 0.85 -2.4
5,655,173 - AO353_25635 0.85 -2.8
5,655,204 + AO353_25635 0.88 -1.2
5,655,204 + AO353_25635 0.88 -2.8
5,655,204 + AO353_25635 0.88 -2.2
5,655,204 + AO353_25635 0.88 -2.0
5,655,204 + AO353_25635 0.88 -1.6
5,655,204 + AO353_25635 0.88 -3.5
5,655,205 - AO353_25635 0.88 -3.4
5,655,383 - -2.0
5,655,449 + -1.0
5,655,449 + -1.8
5,655,450 - -0.9
5,655,477 - +0.3
5,655,517 - -1.2
5,655,564 - -2.4
5,655,644 + -1.2
5,655,644 + -3.5
5,655,645 - -2.2
5,655,645 - -1.4
5,655,645 - -0.9
5,655,645 - -1.9
5,655,776 + AO353_25640 0.28 -0.0
5,655,777 - AO353_25640 0.28 -1.9
5,655,895 + AO353_25640 0.53 -1.8
5,656,031 + AO353_25640 0.81 -0.8
5,656,031 + AO353_25640 0.81 -0.8
5,656,031 + AO353_25640 0.81 -3.6
5,656,081 - -4.4
5,656,101 + -2.5
5,656,121 + -3.7
5,656,121 + -2.5
5,656,122 - -2.8
5,656,122 - -2.4
5,656,122 - -3.0
5,656,122 - -2.0
5,656,122 - -2.0
5,656,122 - -1.4
5,656,122 - -1.0
5,656,162 + -1.8
5,656,330 + AO353_25645 0.26 -1.8
5,656,330 + AO353_25645 0.26 -1.2
5,656,330 + AO353_25645 0.26 -1.4
5,656,330 + AO353_25645 0.26 -4.1
5,656,330 + AO353_25645 0.26 -0.4
5,656,331 - AO353_25645 0.26 -1.2
5,656,331 - AO353_25645 0.26 -2.3
5,656,331 - AO353_25645 0.26 -2.3
5,656,500 - AO353_25645 0.48 -2.4
5,656,750 - AO353_25645 0.81 -1.5
5,656,750 - AO353_25645 0.81 -1.5
5,656,750 - AO353_25645 0.81 -1.8
5,656,761 + AO353_25645 0.83 -1.3
5,656,761 + AO353_25645 0.83 -3.3
5,656,761 + AO353_25645 0.83 -3.4
5,656,761 + AO353_25645 0.83 -3.1
5,656,762 - AO353_25645 0.83 -1.6
5,656,762 - AO353_25645 0.83 -2.3
5,656,762 - AO353_25645 0.83 -1.8
5,656,762 - AO353_25645 0.83 -0.6
5,656,762 - AO353_25645 0.83 -2.5
5,656,762 - AO353_25645 0.83 -2.7
5,656,840 + -0.8
5,656,840 + -1.2
5,656,840 + -2.3
5,656,840 + -3.6
5,656,840 + -0.8
5,656,840 + -0.4
5,656,840 + -2.6
5,656,841 - -1.4
5,656,841 - -1.9
5,656,841 - +1.2
5,656,841 - -1.2
5,656,841 - -1.4
5,656,863 + -2.0
5,656,863 + -2.1
5,656,864 - -0.5
5,656,864 - -3.4
5,656,864 - -0.0
5,656,864 - -2.4
5,656,865 + -2.2
5,656,865 + -1.9
5,656,865 + -1.8
5,656,866 - -0.7
5,656,890 - -0.8
5,656,890 - -2.1
5,656,890 - +0.3
5,657,053 - AO353_25650 0.12 -1.5
5,657,193 + AO353_25650 0.31 -1.8
5,657,193 + AO353_25650 0.31 -0.9
5,657,193 + AO353_25650 0.31 -2.3
5,657,193 + AO353_25650 0.31 -1.2
5,657,193 + AO353_25650 0.31 -3.3
5,657,193 + AO353_25650 0.31 -2.4
5,657,194 - AO353_25650 0.32 -0.1
5,657,194 - AO353_25650 0.32 +0.9
5,657,194 - AO353_25650 0.32 -0.5
5,657,194 - AO353_25650 0.32 +0.1
5,657,196 + AO353_25650 0.32 -2.7
5,657,197 - AO353_25650 0.32 -0.1
5,657,197 - AO353_25650 0.32 -0.6
5,657,241 + AO353_25650 0.38 +0.1
5,657,241 + AO353_25650 0.38 -1.6
5,657,241 + AO353_25650 0.38 -0.4
5,657,242 - AO353_25650 0.38 +1.1
5,657,242 - AO353_25650 0.38 +1.7
5,657,242 - AO353_25650 0.38 +2.6
5,657,265 + AO353_25650 0.41 -2.3
5,657,266 - AO353_25650 0.42 +1.1
5,657,266 - AO353_25650 0.42 +1.1
5,657,334 + AO353_25650 0.51 -1.8
5,657,334 + AO353_25650 0.51 -2.1
5,657,335 - +4.1
5,657,335 - AO353_25650 0.51 +0.7
5,657,434 - AO353_25650 0.65 +1.0
5,657,466 + AO353_25650 0.70 -2.6
5,657,466 + AO353_25650 0.70 -0.5
5,657,466 + AO353_25650 0.70 -1.9
5,657,466 + AO353_25650 0.70 +1.6
5,657,466 + -1.3
5,657,466 + AO353_25650 0.70 -1.8
5,657,466 + AO353_25650 0.70 -1.3
5,657,466 + AO353_25650 0.70 -2.5
5,657,466 + AO353_25650 0.70 -2.1
5,657,467 - AO353_25650 0.70 -1.8
5,657,467 - AO353_25650 0.70 +1.2
5,657,467 - AO353_25650 0.70 +1.2
5,657,467 - AO353_25650 0.70 +1.5
5,657,467 - AO353_25650 0.70 -0.0
5,657,467 - AO353_25650 0.70 -0.3
5,657,467 - AO353_25650 0.70 +1.4
5,657,467 - AO353_25650 0.70 +0.8
5,657,490 + AO353_25650 0.73 -3.7
5,657,491 - AO353_25650 0.73 -1.5
5,657,491 - AO353_25650 0.73 +1.0
5,657,491 - AO353_25650 0.73 +0.0
5,657,601 - AO353_25650 0.89 +1.3
5,657,628 + +1.0
5,657,628 + -0.0
5,657,629 - +0.2
5,657,709 - -2.4
5,657,735 + -1.4
5,657,735 + -0.4
5,657,735 + -1.4
5,657,735 + -3.2
5,657,735 + -0.3
5,657,735 + -3.1
5,657,736 - -0.4
5,657,736 - -1.9
5,657,763 - AO353_25655 0.11 -0.3

Or see this region's nucleotide sequence