Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25185

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25180 and AO353_25185 are separated by 50 nucleotidesAO353_25185 and AO353_25190 are separated by 159 nucleotides AO353_25180: AO353_25180 - acetylpolyamine aminohydrolase, at 5,555,411 to 5,556,445 _25180 AO353_25185: AO353_25185 - ornithine cyclodeaminase, at 5,556,496 to 5,557,548 _25185 AO353_25190: AO353_25190 - amino acid transporter, at 5,557,708 to 5,559,123 _25190 Position (kb) 5556 5557 5558Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5555.535 kb on + strand, within AO353_25180at 5555.565 kb on + strand, within AO353_25180at 5555.566 kb on - strand, within AO353_25180at 5555.566 kb on - strand, within AO353_25180at 5555.582 kb on + strand, within AO353_25180at 5555.583 kb on - strand, within AO353_25180at 5555.583 kb on - strand, within AO353_25180at 5555.606 kb on + strand, within AO353_25180at 5555.679 kb on + strand, within AO353_25180at 5555.744 kb on + strand, within AO353_25180at 5555.900 kb on + strand, within AO353_25180at 5555.900 kb on + strand, within AO353_25180at 5555.900 kb on + strand, within AO353_25180at 5555.900 kb on + strand, within AO353_25180at 5555.901 kb on - strand, within AO353_25180at 5555.901 kb on - strand, within AO353_25180at 5555.901 kb on - strand, within AO353_25180at 5555.901 kb on - strand, within AO353_25180at 5555.918 kb on + strand, within AO353_25180at 5555.919 kb on - strand, within AO353_25180at 5555.919 kb on - strand, within AO353_25180at 5555.919 kb on - strand, within AO353_25180at 5556.030 kb on - strand, within AO353_25180at 5556.083 kb on + strand, within AO353_25180at 5556.089 kb on + strand, within AO353_25180at 5556.089 kb on + strand, within AO353_25180at 5556.089 kb on + strand, within AO353_25180at 5556.089 kb on + strand, within AO353_25180at 5556.090 kb on - strand, within AO353_25180at 5556.092 kb on + strand, within AO353_25180at 5556.093 kb on - strand, within AO353_25180at 5556.093 kb on - strand, within AO353_25180at 5556.093 kb on - strand, within AO353_25180at 5556.093 kb on - strand, within AO353_25180at 5556.093 kb on - strand, within AO353_25180at 5556.137 kb on + strand, within AO353_25180at 5556.137 kb on + strand, within AO353_25180at 5556.183 kb on - strand, within AO353_25180at 5556.244 kb on + strand, within AO353_25180at 5556.245 kb on - strand, within AO353_25180at 5556.245 kb on - strand, within AO353_25180at 5556.333 kb on + strand, within AO353_25180at 5556.377 kb on + strandat 5556.377 kb on + strandat 5556.377 kb on + strandat 5556.378 kb on - strandat 5556.378 kb on - strandat 5556.378 kb on - strandat 5556.378 kb on - strandat 5556.475 kb on - strandat 5556.580 kb on + strandat 5556.580 kb on + strandat 5556.580 kb on + strandat 5556.580 kb on + strandat 5556.580 kb on + strandat 5556.580 kb on + strandat 5556.580 kb on + strandat 5556.581 kb on - strandat 5556.581 kb on - strandat 5556.581 kb on - strandat 5556.581 kb on - strandat 5556.581 kb on - strandat 5556.581 kb on - strandat 5556.581 kb on - strandat 5556.581 kb on - strandat 5556.581 kb on - strandat 5556.581 kb on - strandat 5556.581 kb on - strandat 5556.595 kb on + strandat 5556.595 kb on + strandat 5556.596 kb on - strandat 5556.618 kb on + strand, within AO353_25185at 5556.618 kb on + strand, within AO353_25185at 5556.619 kb on - strand, within AO353_25185at 5556.691 kb on + strand, within AO353_25185at 5556.691 kb on + strand, within AO353_25185at 5556.691 kb on + strand, within AO353_25185at 5556.703 kb on + strand, within AO353_25185at 5556.703 kb on + strand, within AO353_25185at 5556.704 kb on - strand, within AO353_25185at 5557.059 kb on - strand, within AO353_25185at 5557.059 kb on - strand, within AO353_25185at 5557.059 kb on - strand, within AO353_25185at 5557.093 kb on - strand, within AO353_25185at 5557.093 kb on - strand, within AO353_25185at 5557.114 kb on + strand, within AO353_25185at 5557.114 kb on + strand, within AO353_25185at 5557.114 kb on + strand, within AO353_25185at 5557.114 kb on + strand, within AO353_25185at 5557.114 kb on + strand, within AO353_25185at 5557.114 kb on + strand, within AO353_25185at 5557.115 kb on - strand, within AO353_25185at 5557.115 kb on - strand, within AO353_25185at 5557.115 kb on - strand, within AO353_25185at 5557.159 kb on - strand, within AO353_25185at 5557.159 kb on - strand, within AO353_25185at 5557.159 kb on - strand, within AO353_25185at 5557.411 kb on + strand, within AO353_25185at 5557.461 kb on - strandat 5557.461 kb on - strandat 5557.461 kb on - strandat 5557.461 kb on - strandat 5557.481 kb on + strandat 5557.481 kb on + strandat 5557.482 kb on - strandat 5557.482 kb on - strandat 5557.482 kb on - strandat 5557.482 kb on - strandat 5557.602 kb on + strandat 5557.655 kb on + strandat 5557.689 kb on - strandat 5557.716 kb on + strandat 5557.782 kb on - strandat 5557.807 kb on - strandat 5557.870 kb on + strand, within AO353_25190at 5557.870 kb on + strand, within AO353_25190at 5557.870 kb on + strand, within AO353_25190at 5557.870 kb on + strand, within AO353_25190at 5557.870 kb on + strand, within AO353_25190at 5557.870 kb on + strand, within AO353_25190at 5557.870 kb on + strand, within AO353_25190at 5557.871 kb on - strand, within AO353_25190at 5557.871 kb on - strand, within AO353_25190at 5557.871 kb on - strand, within AO353_25190at 5557.871 kb on - strand, within AO353_25190at 5557.871 kb on - strand, within AO353_25190at 5557.871 kb on - strand, within AO353_25190at 5557.871 kb on - strand, within AO353_25190at 5557.872 kb on + strand, within AO353_25190at 5557.872 kb on + strand, within AO353_25190at 5557.872 kb on + strand, within AO353_25190at 5557.872 kb on + strand, within AO353_25190at 5557.872 kb on + strand, within AO353_25190at 5557.873 kb on - strand, within AO353_25190at 5557.873 kb on - strand, within AO353_25190at 5557.873 kb on - strand, within AO353_25190at 5558.051 kb on + strand, within AO353_25190at 5558.074 kb on + strand, within AO353_25190at 5558.091 kb on - strand, within AO353_25190at 5558.115 kb on + strand, within AO353_25190at 5558.115 kb on + strand, within AO353_25190at 5558.115 kb on + strand, within AO353_25190at 5558.120 kb on + strand, within AO353_25190at 5558.120 kb on + strand, within AO353_25190at 5558.255 kb on + strand, within AO353_25190at 5558.470 kb on + strand, within AO353_25190at 5558.470 kb on + strand, within AO353_25190at 5558.471 kb on - strand, within AO353_25190at 5558.494 kb on - strand, within AO353_25190

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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5,555,535 + AO353_25180 0.12 +1.7
5,555,565 + AO353_25180 0.15 -0.6
5,555,566 - AO353_25180 0.15 +1.2
5,555,566 - AO353_25180 0.15 +1.6
5,555,582 + AO353_25180 0.17 +1.4
5,555,583 - AO353_25180 0.17 +1.3
5,555,583 - AO353_25180 0.17 -0.3
5,555,606 + AO353_25180 0.19 +1.7
5,555,679 + AO353_25180 0.26 +0.9
5,555,744 + AO353_25180 0.32 +1.7
5,555,900 + AO353_25180 0.47 +1.7
5,555,900 + AO353_25180 0.47 +3.5
5,555,900 + AO353_25180 0.47 +0.6
5,555,900 + AO353_25180 0.47 -0.0
5,555,901 - AO353_25180 0.47 +1.1
5,555,901 - AO353_25180 0.47 +0.9
5,555,901 - AO353_25180 0.47 +1.6
5,555,901 - AO353_25180 0.47 +1.7
5,555,918 + AO353_25180 0.49 +0.6
5,555,919 - AO353_25180 0.49 +1.9
5,555,919 - AO353_25180 0.49 +1.4
5,555,919 - AO353_25180 0.49 +0.7
5,556,030 - AO353_25180 0.60 +2.1
5,556,083 + AO353_25180 0.65 -2.0
5,556,089 + AO353_25180 0.66 -0.7
5,556,089 + AO353_25180 0.66 -0.1
5,556,089 + AO353_25180 0.66 -2.0
5,556,089 + AO353_25180 0.66 -0.3
5,556,090 - AO353_25180 0.66 +1.6
5,556,092 + AO353_25180 0.66 -1.9
5,556,093 - AO353_25180 0.66 +1.4
5,556,093 - AO353_25180 0.66 +1.2
5,556,093 - AO353_25180 0.66 +0.1
5,556,093 - AO353_25180 0.66 -0.3
5,556,093 - AO353_25180 0.66 +1.8
5,556,137 + AO353_25180 0.70 -0.7
5,556,137 + AO353_25180 0.70 -1.0
5,556,183 - AO353_25180 0.75 +1.2
5,556,244 + AO353_25180 0.80 -0.4
5,556,245 - AO353_25180 0.81 +0.8
5,556,245 - AO353_25180 0.81 +0.9
5,556,333 + AO353_25180 0.89 -2.1
5,556,377 + +1.1
5,556,377 + -2.4
5,556,377 + -0.8
5,556,378 - +2.0
5,556,378 - +0.8
5,556,378 - +1.7
5,556,378 - +0.7
5,556,475 - +0.6
5,556,580 + +1.1
5,556,580 + -0.0
5,556,580 + -0.0
5,556,580 + +0.9
5,556,580 + +1.6
5,556,580 + +1.1
5,556,580 + -0.0
5,556,581 - +0.8
5,556,581 - +1.1
5,556,581 - +1.4
5,556,581 - +1.4
5,556,581 - +1.6
5,556,581 - +1.0
5,556,581 - -0.1
5,556,581 - +0.9
5,556,581 - +0.5
5,556,581 - +2.6
5,556,581 - +1.6
5,556,595 + +0.8
5,556,595 + +0.6
5,556,596 - +3.8
5,556,618 + AO353_25185 0.12 +0.1
5,556,618 + AO353_25185 0.12 +1.1
5,556,619 - AO353_25185 0.12 +1.4
5,556,691 + AO353_25185 0.19 +0.7
5,556,691 + AO353_25185 0.19 +1.0
5,556,691 + AO353_25185 0.19 +1.5
5,556,703 + AO353_25185 0.20 +1.4
5,556,703 + AO353_25185 0.20 +1.5
5,556,704 - AO353_25185 0.20 +0.2
5,557,059 - AO353_25185 0.53 -0.8
5,557,059 - AO353_25185 0.53 +1.5
5,557,059 - AO353_25185 0.53 +0.4
5,557,093 - AO353_25185 0.57 +1.1
5,557,093 - AO353_25185 0.57 +2.3
5,557,114 + AO353_25185 0.59 +1.0
5,557,114 + AO353_25185 0.59 +0.5
5,557,114 + AO353_25185 0.59 +0.5
5,557,114 + AO353_25185 0.59 +0.5
5,557,114 + AO353_25185 0.59 +1.9
5,557,114 + AO353_25185 0.59 +0.0
5,557,115 - AO353_25185 0.59 +1.6
5,557,115 - AO353_25185 0.59 +0.8
5,557,115 - AO353_25185 0.59 +1.4
5,557,159 - AO353_25185 0.63 +0.4
5,557,159 - AO353_25185 0.63 +1.4
5,557,159 - AO353_25185 0.63 +0.7
5,557,411 + AO353_25185 0.87 -1.4
5,557,461 - +1.0
5,557,461 - +0.9
5,557,461 - +1.1
5,557,461 - +1.4
5,557,481 + -0.4
5,557,481 + -1.5
5,557,482 - +2.1
5,557,482 - +1.1
5,557,482 - +0.2
5,557,482 - +0.8
5,557,602 + -2.3
5,557,655 + -1.9
5,557,689 - +2.3
5,557,716 + +1.7
5,557,782 - +2.1
5,557,807 - +0.7
5,557,870 + AO353_25190 0.11 +0.1
5,557,870 + AO353_25190 0.11 +0.8
5,557,870 + AO353_25190 0.11 -0.4
5,557,870 + AO353_25190 0.11 +1.2
5,557,870 + AO353_25190 0.11 +2.3
5,557,870 + AO353_25190 0.11 +2.0
5,557,870 + AO353_25190 0.11 +0.9
5,557,871 - AO353_25190 0.12 +1.0
5,557,871 - AO353_25190 0.12 +2.4
5,557,871 - AO353_25190 0.12 +0.6
5,557,871 - AO353_25190 0.12 +1.4
5,557,871 - AO353_25190 0.12 +1.8
5,557,871 - AO353_25190 0.12 +1.1
5,557,871 - AO353_25190 0.12 +2.1
5,557,872 + AO353_25190 0.12 +1.4
5,557,872 + AO353_25190 0.12 +1.0
5,557,872 + AO353_25190 0.12 +1.6
5,557,872 + AO353_25190 0.12 +1.4
5,557,872 + AO353_25190 0.12 -1.6
5,557,873 - AO353_25190 0.12 +1.9
5,557,873 - AO353_25190 0.12 +1.5
5,557,873 - AO353_25190 0.12 +1.5
5,558,051 + AO353_25190 0.24 +0.7
5,558,074 + AO353_25190 0.26 +2.2
5,558,091 - AO353_25190 0.27 +1.8
5,558,115 + AO353_25190 0.29 +1.6
5,558,115 + AO353_25190 0.29 +1.6
5,558,115 + AO353_25190 0.29 +3.4
5,558,120 + AO353_25190 0.29 -0.2
5,558,120 + AO353_25190 0.29 +1.6
5,558,255 + AO353_25190 0.39 +1.9
5,558,470 + AO353_25190 0.54 +2.3
5,558,470 + AO353_25190 0.54 +1.5
5,558,471 - AO353_25190 0.54 +1.1
5,558,494 - AO353_25190 0.56 +1.8

Or see this region's nucleotide sequence