Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3811

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgmk and rpoZ are separated by 58 nucleotidesrpoZ and Shewana3_3812 are separated by 43 nucleotides Shewana3_3810: gmk - guanylate kinase (RefSeq), at 4,576,589 to 4,577,212 gmk Shewana3_3811: rpoZ - DNA-directed RNA polymerase subunit omega (RefSeq), at 4,577,271 to 4,577,549 rpoZ Shewana3_3812: Shewana3_3812 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq), at 4,577,593 to 4,579,695 _3812 Position (kb) 4577 4578Strain fitness (log2 ratio) -2 -1 0 1at 4576.344 kb on - strandat 4576.379 kb on + strandat 4576.466 kb on - strandat 4577.162 kb on + strandat 4577.286 kb on + strandat 4577.369 kb on + strand, within rpoZat 4577.474 kb on + strand, within rpoZat 4577.558 kb on - strandat 4577.564 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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4,576,344 - +0.4
4,576,379 + -0.5
4,576,466 - +0.9
4,577,162 + -1.9
4,577,286 + -2.2
4,577,369 + rpoZ Shewana3_3811 0.35 -2.7
4,577,474 + rpoZ Shewana3_3811 0.73 +0.1
4,577,558 - -0.7
4,577,564 + -1.6

Or see this region's nucleotide sequence