Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3558 and Shewana3_3559 are separated by 5 nucleotides Shewana3_3559 and Shewana3_3560 overlap by 17 nucleotides Shewana3_3560 and Shewana3_3561 are separated by 67 nucleotides
Shewana3_3558: Shewana3_3558 - hypothetical protein (RefSeq), at 4,265,889 to 4,266,881
_3558
Shewana3_3559: Shewana3_3559 - ubiquinol--cytochrome-c reductase (RefSeq), at 4,266,887 to 4,267,888
_3559
Shewana3_3560: Shewana3_3560 - radical SAM domain-containing protein (RefSeq), at 4,267,872 to 4,269,179
_3560
Shewana3_3561: Shewana3_3561 - no description, at 4,269,247 to 4,270,763
_3561
Position (kb) 4267
4268
4269
4270 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4266.889 kb on + strand at 4266.897 kb on - strand at 4266.934 kb on + strand at 4266.942 kb on - strand at 4267.251 kb on - strand, within Shewana3_3559 at 4267.453 kb on + strand, within Shewana3_3559 at 4267.453 kb on + strand, within Shewana3_3559 at 4267.453 kb on + strand, within Shewana3_3559 at 4267.453 kb on + strand, within Shewana3_3559 at 4267.461 kb on - strand, within Shewana3_3559 at 4267.505 kb on - strand, within Shewana3_3559 at 4267.512 kb on + strand, within Shewana3_3559 at 4267.512 kb on + strand, within Shewana3_3559 at 4267.629 kb on - strand, within Shewana3_3559 at 4267.758 kb on - strand, within Shewana3_3559 at 4267.758 kb on - strand, within Shewana3_3559 at 4267.758 kb on - strand, within Shewana3_3559 at 4267.758 kb on - strand, within Shewana3_3559 at 4267.793 kb on - strand at 4268.034 kb on - strand, within Shewana3_3560 at 4268.091 kb on + strand, within Shewana3_3560 at 4268.181 kb on - strand, within Shewana3_3560 at 4268.215 kb on + strand, within Shewana3_3560 at 4268.336 kb on + strand, within Shewana3_3560 at 4268.344 kb on - strand, within Shewana3_3560 at 4268.344 kb on - strand, within Shewana3_3560 at 4268.383 kb on + strand, within Shewana3_3560 at 4268.424 kb on - strand, within Shewana3_3560 at 4268.506 kb on + strand, within Shewana3_3560 at 4268.570 kb on + strand, within Shewana3_3560 at 4268.984 kb on + strand, within Shewana3_3560 at 4269.015 kb on - strand, within Shewana3_3560 at 4269.017 kb on + strand, within Shewana3_3560 at 4269.209 kb on + strand at 4269.291 kb on + strand at 4269.510 kb on + strand, within Shewana3_3561 at 4269.593 kb on + strand, within Shewana3_3561 at 4269.988 kb on - strand, within Shewana3_3561 at 4270.034 kb on - strand, within Shewana3_3561 at 4270.049 kb on + strand, within Shewana3_3561 at 4270.057 kb on - strand, within Shewana3_3561 at 4270.110 kb on - strand, within Shewana3_3561 at 4270.153 kb on + strand, within Shewana3_3561
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 4,266,889 + +0.3 4,266,897 - -0.1 4,266,934 + +0.8 4,266,942 - +1.4 4,267,251 - Shewana3_3559 0.36 +0.2 4,267,453 + Shewana3_3559 0.56 +1.2 4,267,453 + Shewana3_3559 0.56 +0.2 4,267,453 + Shewana3_3559 0.56 -1.0 4,267,453 + Shewana3_3559 0.56 -0.3 4,267,461 - Shewana3_3559 0.57 +1.0 4,267,505 - Shewana3_3559 0.62 -0.1 4,267,512 + Shewana3_3559 0.62 -0.4 4,267,512 + Shewana3_3559 0.62 -0.3 4,267,629 - Shewana3_3559 0.74 +0.0 4,267,758 - Shewana3_3559 0.87 +1.0 4,267,758 - Shewana3_3559 0.87 +0.6 4,267,758 - Shewana3_3559 0.87 +0.2 4,267,758 - Shewana3_3559 0.87 +0.3 4,267,793 - +1.9 4,268,034 - Shewana3_3560 0.12 +0.5 4,268,091 + Shewana3_3560 0.17 +0.9 4,268,181 - Shewana3_3560 0.24 -0.2 4,268,215 + Shewana3_3560 0.26 +1.4 4,268,336 + Shewana3_3560 0.35 -0.2 4,268,344 - Shewana3_3560 0.36 +1.1 4,268,344 - Shewana3_3560 0.36 +1.0 4,268,383 + Shewana3_3560 0.39 -0.4 4,268,424 - Shewana3_3560 0.42 +0.6 4,268,506 + Shewana3_3560 0.48 +0.6 4,268,570 + Shewana3_3560 0.53 -0.1 4,268,984 + Shewana3_3560 0.85 +0.2 4,269,015 - Shewana3_3560 0.87 +0.4 4,269,017 + Shewana3_3560 0.88 +0.2 4,269,209 + +0.0 4,269,291 + -0.4 4,269,510 + Shewana3_3561 0.17 +0.0 4,269,593 + Shewana3_3561 0.23 +0.7 4,269,988 - Shewana3_3561 0.49 -1.8 4,270,034 - Shewana3_3561 0.52 +0.6 4,270,049 + Shewana3_3561 0.53 -1.1 4,270,057 - Shewana3_3561 0.53 +0.8 4,270,110 - Shewana3_3561 0.57 -0.1 4,270,153 + Shewana3_3561 0.60 -0.2
Or see this region's nucleotide sequence