Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3423 and Shewana3_3424 are separated by 234 nucleotides Shewana3_3424 and Shewana3_3425 are separated by 1 nucleotides Shewana3_3425 and Shewana3_3426 overlap by 10 nucleotides Shewana3_3426 and Shewana3_3427 are separated by 2 nucleotides
Shewana3_3423: Shewana3_3423 - hypothetical protein (RefSeq), at 4,100,456 to 4,101,706
_3423
Shewana3_3424: Shewana3_3424 - methylation site containing protein (RefSeq), at 4,101,941 to 4,102,312
_3424
Shewana3_3425: Shewana3_3425 - methylation site containing protein (RefSeq), at 4,102,314 to 4,102,748
_3425
Shewana3_3426: Shewana3_3426 - prepilin-type cleavage/methylation-like protein (RefSeq), at 4,102,739 to 4,103,146
_3426
Shewana3_3427: Shewana3_3427 - prepilin-type cleavage/methylation-like protein (RefSeq), at 4,103,149 to 4,103,691
_3427
Position (kb)
4101
4102
4103 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4100.985 kb on + strand, within Shewana3_3423 at 4101.138 kb on - strand, within Shewana3_3423 at 4101.419 kb on + strand, within Shewana3_3423 at 4101.734 kb on - strand at 4101.907 kb on + strand at 4101.960 kb on + strand at 4101.968 kb on - strand at 4102.137 kb on - strand, within Shewana3_3424 at 4102.137 kb on - strand, within Shewana3_3424 at 4102.335 kb on + strand at 4102.345 kb on - strand at 4102.941 kb on + strand, within Shewana3_3426 at 4103.023 kb on - strand, within Shewana3_3426 at 4103.259 kb on + strand, within Shewana3_3427 at 4103.297 kb on - strand, within Shewana3_3427
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 4,100,985 + Shewana3_3423 0.42 -0.8 4,101,138 - Shewana3_3423 0.55 +0.2 4,101,419 + Shewana3_3423 0.77 -0.2 4,101,734 - -0.1 4,101,907 + -0.6 4,101,960 + -0.9 4,101,968 - +0.1 4,102,137 - Shewana3_3424 0.53 -1.0 4,102,137 - Shewana3_3424 0.53 -2.9 4,102,335 + -0.7 4,102,345 - -0.7 4,102,941 + Shewana3_3426 0.50 -0.3 4,103,023 - Shewana3_3426 0.70 -0.0 4,103,259 + Shewana3_3427 0.20 -0.5 4,103,297 - Shewana3_3427 0.27 +0.3
Or see this region's nucleotide sequence