Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3161 and Shewana3_3162 are separated by 141 nucleotides Shewana3_3162 and Shewana3_3163 are separated by 287 nucleotides
Shewana3_3161: Shewana3_3161 - peptidase M16 domain-containing protein (RefSeq), at 3,790,746 to 3,793,595
_3161
Shewana3_3162: Shewana3_3162 - hypothetical protein (RefSeq), at 3,793,737 to 3,794,162
_3162
Shewana3_3163: Shewana3_3163 - sodium:dicarboxylate symporter (RefSeq), at 3,794,450 to 3,795,703
_3163
Position (kb)
3793
3794
3795 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3792.837 kb on + strand, within Shewana3_3161 at 3792.950 kb on + strand, within Shewana3_3161 at 3793.095 kb on - strand, within Shewana3_3161 at 3793.255 kb on - strand, within Shewana3_3161 at 3793.496 kb on - strand at 3793.670 kb on + strand at 3793.678 kb on - strand at 3793.692 kb on + strand at 3794.009 kb on + strand, within Shewana3_3162 at 3794.017 kb on - strand, within Shewana3_3162 at 3794.025 kb on - strand, within Shewana3_3162 at 3794.076 kb on - strand, within Shewana3_3162 at 3794.108 kb on - strand, within Shewana3_3162 at 3794.296 kb on + strand at 3794.343 kb on + strand at 3794.390 kb on - strand at 3794.544 kb on + strand at 3794.634 kb on + strand, within Shewana3_3163 at 3794.683 kb on - strand, within Shewana3_3163 at 3794.712 kb on - strand, within Shewana3_3163 at 3794.829 kb on - strand, within Shewana3_3163 at 3794.876 kb on + strand, within Shewana3_3163 at 3794.884 kb on - strand, within Shewana3_3163 at 3794.948 kb on + strand, within Shewana3_3163 at 3795.041 kb on - strand, within Shewana3_3163 at 3795.125 kb on - strand, within Shewana3_3163
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 3,792,837 + Shewana3_3161 0.73 +0.6 3,792,950 + Shewana3_3161 0.77 -0.3 3,793,095 - Shewana3_3161 0.82 -4.1 3,793,255 - Shewana3_3161 0.88 -0.7 3,793,496 - +1.1 3,793,670 + +0.3 3,793,678 - -0.9 3,793,692 + +0.9 3,794,009 + Shewana3_3162 0.64 -0.6 3,794,017 - Shewana3_3162 0.66 -0.6 3,794,025 - Shewana3_3162 0.68 -0.1 3,794,076 - Shewana3_3162 0.80 -0.1 3,794,108 - Shewana3_3162 0.87 -1.1 3,794,296 + +0.9 3,794,343 + +0.1 3,794,390 - +0.3 3,794,544 + -0.2 3,794,634 + Shewana3_3163 0.15 +0.1 3,794,683 - Shewana3_3163 0.19 +0.7 3,794,712 - Shewana3_3163 0.21 +0.0 3,794,829 - Shewana3_3163 0.30 +0.8 3,794,876 + Shewana3_3163 0.34 -0.8 3,794,884 - Shewana3_3163 0.35 -1.2 3,794,948 + Shewana3_3163 0.40 +0.6 3,795,041 - Shewana3_3163 0.47 +1.7 3,795,125 - Shewana3_3163 0.54 -0.1
Or see this region's nucleotide sequence