Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3078 and Shewana3_3079 are separated by 84 nucleotides Shewana3_3079 and Shewana3_3080 are separated by 18 nucleotides Shewana3_3080 and Shewana3_3081 are separated by 49 nucleotides Shewana3_3081 and Shewana3_3082 are separated by 261 nucleotides
Shewana3_3078: Shewana3_3078 - ribosomal RNA large subunit methyltransferase A, putative (RefSeq), at 3,692,017 to 3,692,856
_3078
Shewana3_3079: Shewana3_3079 - undecaprenyl pyrophosphate phosphatase (RefSeq), at 3,692,941 to 3,693,741
_3079
Shewana3_3080: Shewana3_3080 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (RefSeq), at 3,693,760 to 3,694,269
_3080
Shewana3_3081: Shewana3_3081 - dihydroneopterin aldolase (RefSeq), at 3,694,319 to 3,694,669
_3081
Shewana3_3082: Shewana3_3082 - putative glycerol-3-phosphate acyltransferase PlsY (RefSeq), at 3,694,931 to 3,695,542
_3082
Position (kb)
3693
3694
3695 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3693.224 kb on + strand, within Shewana3_3079 at 3693.277 kb on + strand, within Shewana3_3079 at 3693.368 kb on + strand, within Shewana3_3079 at 3693.399 kb on - strand, within Shewana3_3079 at 3693.496 kb on - strand, within Shewana3_3079 at 3693.512 kb on + strand, within Shewana3_3079 at 3693.606 kb on - strand, within Shewana3_3079 at 3693.617 kb on - strand, within Shewana3_3079 at 3693.627 kb on + strand, within Shewana3_3079 at 3693.630 kb on - strand, within Shewana3_3079 at 3693.783 kb on + strand at 3693.828 kb on - strand, within Shewana3_3080 at 3694.095 kb on - strand, within Shewana3_3080 at 3694.139 kb on + strand, within Shewana3_3080 at 3694.149 kb on + strand, within Shewana3_3080 at 3694.195 kb on + strand, within Shewana3_3080 at 3694.214 kb on - strand, within Shewana3_3080 at 3694.245 kb on - strand at 3694.785 kb on - strand at 3695.216 kb on - strand, within Shewana3_3082
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 3,693,224 + Shewana3_3079 0.35 -0.7 3,693,277 + Shewana3_3079 0.42 +0.2 3,693,368 + Shewana3_3079 0.53 -2.1 3,693,399 - Shewana3_3079 0.57 -1.0 3,693,496 - Shewana3_3079 0.69 -1.6 3,693,512 + Shewana3_3079 0.71 -1.1 3,693,606 - Shewana3_3079 0.83 +0.5 3,693,617 - Shewana3_3079 0.84 +0.4 3,693,627 + Shewana3_3079 0.86 -0.4 3,693,630 - Shewana3_3079 0.86 -0.7 3,693,783 + -1.8 3,693,828 - Shewana3_3080 0.13 -1.8 3,694,095 - Shewana3_3080 0.66 -4.0 3,694,139 + Shewana3_3080 0.74 -3.4 3,694,149 + Shewana3_3080 0.76 -3.7 3,694,195 + Shewana3_3080 0.85 -3.9 3,694,214 - Shewana3_3080 0.89 -3.4 3,694,245 - -3.6 3,694,785 - +1.9 3,695,216 - Shewana3_3082 0.47 +1.6
Or see this region's nucleotide sequence