Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3051

Experiment: Carbon source Sucrose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Sucrose 5 mM
3,657,795	+	gltB	Shewana3_3050	0.80	-2.6
3,657,803	-	gltB	Shewana3_3050	0.81	-3.3
3,657,971	+	gltB	Shewana3_3050	0.84	-4.6
3,658,024	-	gltB	Shewana3_3050	0.86	-4.0
3,658,058	+	gltB	Shewana3_3050	0.86	-4.7
3,658,066	-	gltB	Shewana3_3050	0.87	-3.2
3,658,070	+	gltB	Shewana3_3050	0.87	-4.7
3,658,144	+	gltB	Shewana3_3050	0.88	-3.8
3,658,154	+	gltB	Shewana3_3050	0.88	-4.7
3,658,154	+	gltB	Shewana3_3050	0.88	-4.3
3,658,352	-				-4.8
3,658,826	-	gltD	Shewana3_3051	0.11	-3.2
3,658,832	-	gltD	Shewana3_3051	0.11	+0.6
3,658,832	-	gltD	Shewana3_3051	0.11	-5.1
3,658,928	+	gltD	Shewana3_3051	0.18	-1.0
3,658,928	+	gltD	Shewana3_3051	0.18	-1.2
3,658,934	-	gltD	Shewana3_3051	0.19	-4.8
3,658,956	+	gltD	Shewana3_3051	0.20	-4.4
3,659,062	+	gltD	Shewana3_3051	0.28	-4.4
3,659,140	+	gltD	Shewana3_3051	0.33	-5.1
3,659,140	+	gltD	Shewana3_3051	0.33	-3.6
3,659,140	+	gltD	Shewana3_3051	0.33	-0.0
3,659,140	+	gltD	Shewana3_3051	0.33	-3.2
3,659,140	+	gltD	Shewana3_3051	0.33	-3.3
3,659,140	+	gltD	Shewana3_3051	0.33	-3.1
3,659,140	+	gltD	Shewana3_3051	0.33	-4.0
3,659,140	+	gltD	Shewana3_3051	0.33	-3.9
3,659,148	-	gltD	Shewana3_3051	0.34	-3.0
3,659,148	-	gltD	Shewana3_3051	0.34	-4.5
3,659,148	-	gltD	Shewana3_3051	0.34	+1.6
3,659,148	-	gltD	Shewana3_3051	0.34	-3.4
3,659,148	-	gltD	Shewana3_3051	0.34	-3.7
3,659,223	+	gltD	Shewana3_3051	0.39	-3.7
3,659,240	+	gltD	Shewana3_3051	0.40	-2.6
3,659,250	+	gltD	Shewana3_3051	0.41	-5.0
3,659,311	-	gltD	Shewana3_3051	0.45	-2.3
3,659,454	-	gltD	Shewana3_3051	0.56	-5.5
3,659,471	+	gltD	Shewana3_3051	0.57	-4.8
3,659,504	+	gltD	Shewana3_3051	0.59	-3.5
3,659,562	+	gltD	Shewana3_3051	0.63	-2.6
3,659,568	-	gltD	Shewana3_3051	0.64	-3.8
3,659,603	+	gltD	Shewana3_3051	0.66	-4.0
3,659,659	+	gltD	Shewana3_3051	0.70	-3.0
3,659,777	-	gltD	Shewana3_3051	0.79	-3.9
3,659,809	+	gltD	Shewana3_3051	0.81	-4.6
3,659,832	-	gltD	Shewana3_3051	0.82	-3.0
3,659,868	+	gltD	Shewana3_3051	0.85	-4.1
3,659,868	+	gltD	Shewana3_3051	0.85	-4.7
3,659,977	-				-4.6
3,660,159	+				+0.6
3,660,159	+				+0.8
3,660,160	+				-0.1
3,660,167	-				+0.7
3,660,167	-				-0.4
3,660,242	+				+0.8