Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2793 and Shewana3_2794 are separated by 37 nucleotides Shewana3_2794 and Shewana3_2795 are separated by 74 nucleotides Shewana3_2795 and Shewana3_2796 are separated by 184 nucleotides
Shewana3_2793: Shewana3_2793 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 3,332,138 to 3,333,232
_2793
Shewana3_2794: Shewana3_2794 - putative hydrolase (RefSeq), at 3,333,270 to 3,334,028
_2794
Shewana3_2795: Shewana3_2795 - SNF2-related protein (RefSeq), at 3,334,103 to 3,337,351
_2795
Shewana3_2796: Shewana3_2796 - hypothetical protein (RefSeq), at 3,337,536 to 3,339,359
_2796
Position (kb)
3334
3335
3336
3337
3338 Strain fitness (log2 ratio)
-2
-1
0
1 at 3333.137 kb on + strand at 3333.156 kb on + strand at 3333.185 kb on + strand at 3333.321 kb on - strand at 3333.337 kb on + strand at 3333.469 kb on - strand, within Shewana3_2794 at 3334.009 kb on - strand at 3334.023 kb on - strand at 3334.043 kb on - strand at 3334.043 kb on - strand at 3334.068 kb on - strand at 3334.389 kb on - strand at 3334.389 kb on - strand at 3334.795 kb on + strand, within Shewana3_2795 at 3334.887 kb on + strand, within Shewana3_2795 at 3335.041 kb on + strand, within Shewana3_2795 at 3335.501 kb on - strand, within Shewana3_2795 at 3335.604 kb on - strand, within Shewana3_2795 at 3335.647 kb on - strand, within Shewana3_2795 at 3335.935 kb on - strand, within Shewana3_2795 at 3336.085 kb on + strand, within Shewana3_2795 at 3336.085 kb on + strand, within Shewana3_2795 at 3336.093 kb on - strand, within Shewana3_2795 at 3336.093 kb on - strand, within Shewana3_2795 at 3336.161 kb on - strand, within Shewana3_2795 at 3336.245 kb on - strand, within Shewana3_2795 at 3336.275 kb on - strand, within Shewana3_2795 at 3336.379 kb on + strand, within Shewana3_2795 at 3336.644 kb on - strand, within Shewana3_2795 at 3336.644 kb on - strand, within Shewana3_2795 at 3336.696 kb on - strand, within Shewana3_2795 at 3336.789 kb on - strand, within Shewana3_2795 at 3337.014 kb on - strand, within Shewana3_2795 at 3337.184 kb on + strand at 3337.189 kb on + strand at 3337.290 kb on + strand at 3337.541 kb on - strand at 3337.714 kb on - strand at 3337.864 kb on + strand, within Shewana3_2796 at 3337.864 kb on + strand, within Shewana3_2796 at 3337.864 kb on + strand, within Shewana3_2796 at 3337.872 kb on - strand, within Shewana3_2796 at 3337.875 kb on - strand, within Shewana3_2796 at 3338.008 kb on + strand, within Shewana3_2796 at 3338.023 kb on - strand, within Shewana3_2796 at 3338.040 kb on - strand, within Shewana3_2796 at 3338.258 kb on - strand, within Shewana3_2796 at 3338.298 kb on + strand, within Shewana3_2796
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 3,333,137 + +0.1 3,333,156 + +0.1 3,333,185 + +0.0 3,333,321 - +0.1 3,333,337 + -0.2 3,333,469 - Shewana3_2794 0.26 -0.9 3,334,009 - -0.5 3,334,023 - +0.1 3,334,043 - -1.8 3,334,043 - +0.0 3,334,068 - -0.4 3,334,389 - +0.8 3,334,389 - -0.3 3,334,795 + Shewana3_2795 0.21 -0.7 3,334,887 + Shewana3_2795 0.24 +0.7 3,335,041 + Shewana3_2795 0.29 -0.4 3,335,501 - Shewana3_2795 0.43 -0.1 3,335,604 - Shewana3_2795 0.46 +0.3 3,335,647 - Shewana3_2795 0.48 -0.5 3,335,935 - Shewana3_2795 0.56 +0.2 3,336,085 + Shewana3_2795 0.61 -0.2 3,336,085 + Shewana3_2795 0.61 +0.5 3,336,093 - Shewana3_2795 0.61 +0.8 3,336,093 - Shewana3_2795 0.61 +0.7 3,336,161 - Shewana3_2795 0.63 -0.9 3,336,245 - Shewana3_2795 0.66 +0.3 3,336,275 - Shewana3_2795 0.67 -0.1 3,336,379 + Shewana3_2795 0.70 +0.2 3,336,644 - Shewana3_2795 0.78 +0.3 3,336,644 - Shewana3_2795 0.78 +0.7 3,336,696 - Shewana3_2795 0.80 -0.8 3,336,789 - Shewana3_2795 0.83 +0.1 3,337,014 - Shewana3_2795 0.90 +0.4 3,337,184 + +0.6 3,337,189 + +0.2 3,337,290 + -0.8 3,337,541 - -0.1 3,337,714 - -0.0 3,337,864 + Shewana3_2796 0.18 +0.2 3,337,864 + Shewana3_2796 0.18 +0.2 3,337,864 + Shewana3_2796 0.18 -0.6 3,337,872 - Shewana3_2796 0.18 -0.1 3,337,875 - Shewana3_2796 0.19 +0.4 3,338,008 + Shewana3_2796 0.26 +0.5 3,338,023 - Shewana3_2796 0.27 -0.3 3,338,040 - Shewana3_2796 0.28 -1.1 3,338,258 - Shewana3_2796 0.40 +0.9 3,338,298 + Shewana3_2796 0.42 +0.2
Or see this region's nucleotide sequence