Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2792

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2790 and Shewana3_2791 are separated by 62 nucleotidesShewana3_2791 and Shewana3_2792 overlap by 11 nucleotidesShewana3_2792 and Shewana3_2793 are separated by 61 nucleotides Shewana3_2790: Shewana3_2790 - fructokinase (RefSeq), at 3,330,001 to 3,330,921 _2790 Shewana3_2791: Shewana3_2791 - 3'(2'),5'-bisphosphate nucleotidase (RefSeq), at 3,330,984 to 3,331,790 _2791 Shewana3_2792: Shewana3_2792 - hypothetical protein (RefSeq), at 3,331,780 to 3,332,076 _2792 Shewana3_2793: Shewana3_2793 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 3,332,138 to 3,333,232 _2793 Position (kb) 3331 3332 3333Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3331.004 kb on - strandat 3331.064 kb on - strandat 3331.165 kb on + strand, within Shewana3_2791at 3331.173 kb on - strand, within Shewana3_2791at 3331.916 kb on - strand, within Shewana3_2792at 3332.130 kb on + strandat 3332.180 kb on - strandat 3332.211 kb on - strandat 3332.245 kb on - strandat 3332.278 kb on + strand, within Shewana3_2793at 3332.431 kb on + strand, within Shewana3_2793at 3332.639 kb on - strand, within Shewana3_2793at 3332.644 kb on - strand, within Shewana3_2793at 3332.653 kb on + strand, within Shewana3_2793at 3332.688 kb on + strand, within Shewana3_2793at 3332.732 kb on - strand, within Shewana3_2793at 3332.809 kb on + strand, within Shewana3_2793at 3332.935 kb on + strand, within Shewana3_2793at 3332.966 kb on - strand, within Shewana3_2793

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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3,331,004 - +0.0
3,331,064 - -4.5
3,331,165 + Shewana3_2791 0.22 -3.6
3,331,173 - Shewana3_2791 0.23 -3.7
3,331,916 - Shewana3_2792 0.46 -0.1
3,332,130 + +0.6
3,332,180 - -0.8
3,332,211 - -0.5
3,332,245 - -0.1
3,332,278 + Shewana3_2793 0.13 +0.0
3,332,431 + Shewana3_2793 0.27 -0.7
3,332,639 - Shewana3_2793 0.46 +0.2
3,332,644 - Shewana3_2793 0.46 -0.5
3,332,653 + Shewana3_2793 0.47 -3.7
3,332,688 + Shewana3_2793 0.50 +1.5
3,332,732 - Shewana3_2793 0.54 +0.1
3,332,809 + Shewana3_2793 0.61 -0.7
3,332,935 + Shewana3_2793 0.73 +1.0
3,332,966 - Shewana3_2793 0.76 +0.3

Or see this region's nucleotide sequence