Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_R0105 and Shewana3_R0106 are separated by 160 nucleotides Shewana3_R0106 and Shewana3_R0107 are separated by 35 nucleotides Shewana3_R0107 and Shewana3_R0108 are separated by 36 nucleotides Shewana3_R0108 and Shewana3_R0109 are separated by 35 nucleotides Shewana3_R0109 and Shewana3_R0110 are separated by 54 nucleotides Shewana3_R0110 and Shewana3_2529 are separated by 142 nucleotides Shewana3_2529 and Shewana3_2530 are separated by 24 nucleotides Shewana3_2530 and Shewana3_2531 are separated by 46 nucleotides
Shewana3_R0105: Shewana3_R0105 - tRNA-Lys (RefSeq), at 3,025,256 to 3,025,331
_R0105
Shewana3_R0106: Shewana3_R0106 - tRNA-Lys (RefSeq), at 3,025,492 to 3,025,567
_R0106
Shewana3_R0107: Shewana3_R0107 - tRNA-Lys (RefSeq), at 3,025,603 to 3,025,678
_R0107
Shewana3_R0108: Shewana3_R0108 - tRNA-Lys (RefSeq), at 3,025,715 to 3,025,790
_R0108
Shewana3_R0109: Shewana3_R0109 - tRNA-Lys (RefSeq), at 3,025,826 to 3,025,901
_R0109
Shewana3_R0110: Shewana3_R0110 - tRNA-Lys (RefSeq), at 3,025,956 to 3,026,031
_R0110
Shewana3_2529: Shewana3_2529 - hypothetical protein (RefSeq), at 3,026,174 to 3,026,926
_2529
Shewana3_2530: Shewana3_2530 - OmpA/MotB domain-containing protein (RefSeq), at 3,026,951 to 3,027,487
_2530
Shewana3_2531: Shewana3_2531 - TolB domain-containing protein (RefSeq), at 3,027,534 to 3,028,862
_2531
Position (kb)
3026
3027 Strain fitness (log2 ratio)
-1
0
1 at 3026.255 kb on + strand, within Shewana3_2529 at 3026.446 kb on + strand, within Shewana3_2529 at 3026.965 kb on - strand at 3026.965 kb on - strand
Per-strain Table
Or see this region's nucleotide sequence