Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1854

Experiment: Carbon source Sucrose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Sucrose 5 mM
2,195,272	+	hisD	Shewana3_1853	0.35	-3.4
2,195,369	-	hisD	Shewana3_1853	0.42	-4.2
2,195,825	+	hisD	Shewana3_1853	0.77	-4.1
2,195,825	+	hisD	Shewana3_1853	0.77	-5.3
2,195,924	-	hisD	Shewana3_1853	0.85	-4.0
2,196,027	-				-4.9
2,196,195	-				-1.2
2,196,195	-				-1.8
2,196,195	-				-0.7
2,196,380	+	hisG	Shewana3_1854	0.28	-2.7
2,196,380	+	hisG	Shewana3_1854	0.28	-1.4
2,196,398	-	hisG	Shewana3_1854	0.30	-4.7
2,196,444	-	hisG	Shewana3_1854	0.35	-3.8
2,196,446	+	hisG	Shewana3_1854	0.36	-3.8
2,196,475	+	hisG	Shewana3_1854	0.39	-4.3
2,196,966	-				-3.6
2,196,996	+				-2.4
2,197,026	+				-4.7
2,197,216	-				-2.7
2,197,237	+				-1.5
2,197,270	-				-2.3
2,197,326	-				-1.7
2,197,639	+				+0.4
2,197,666	-				+1.2
2,197,670	-				-0.8
2,197,741	-				-0.3
2,197,748	+				-0.4
2,197,800	-		Shewana3_1855	0.14	-0.1
2,197,810	-		Shewana3_1855	0.15	-0.8
2,197,836	-		Shewana3_1855	0.18	+0.2
2,197,859	+		Shewana3_1855	0.21	-0.2
2,197,859	+		Shewana3_1855	0.21	-1.2
2,197,867	-		Shewana3_1855	0.22	-0.1
2,197,877	-		Shewana3_1855	0.23	-1.3
2,197,896	+		Shewana3_1855	0.26	+0.6
2,197,901	+		Shewana3_1855	0.26	-0.4
2,197,909	-		Shewana3_1855	0.27	-0.4
2,197,920	+		Shewana3_1855	0.29	-0.0
2,197,920	+		Shewana3_1855	0.29	-0.3
2,197,920	+		Shewana3_1855	0.29	+0.0
2,197,920	+		Shewana3_1855	0.29	+1.0
2,197,920	+		Shewana3_1855	0.29	-0.2
2,197,920	+		Shewana3_1855	0.29	+0.1
2,197,920	+		Shewana3_1855	0.29	-0.6
2,197,920	+		Shewana3_1855	0.29	-0.7
2,197,920	+		Shewana3_1855	0.29	+0.3
2,197,928	-		Shewana3_1855	0.29	-0.2
2,197,928	-		Shewana3_1855	0.29	-0.2
2,197,928	-		Shewana3_1855	0.29	+0.5
2,197,928	-		Shewana3_1855	0.29	-0.5
2,197,928	-		Shewana3_1855	0.29	-0.4
2,197,928	-		Shewana3_1855	0.29	-0.1
2,197,928	-		Shewana3_1855	0.29	+0.1
2,197,928	-		Shewana3_1855	0.29	+0.9
2,197,928	-		Shewana3_1855	0.29	-0.8
2,197,928	-		Shewana3_1855	0.29	+0.3
2,197,928	-		Shewana3_1855	0.29	+0.1
2,197,928	-		Shewana3_1855	0.29	+1.6
2,197,928	-		Shewana3_1855	0.29	+0.2
2,197,935	-		Shewana3_1855	0.30	-0.9
2,197,937	+		Shewana3_1855	0.31	-1.2
2,197,945	-		Shewana3_1855	0.32	-0.4
2,197,968	+		Shewana3_1855	0.34	-0.3
2,198,002	-		Shewana3_1855	0.38	-0.6