Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dcd and Shewana3_1764 are separated by 5 nucleotides Shewana3_1764 and Shewana3_1765 overlap by 4 nucleotides Shewana3_1765 and tmk overlap by 4 nucleotides tmk and Shewana3_1767 overlap by 7 nucleotides
Shewana3_1763: dcd - deoxycytidine triphosphate deaminase (RefSeq), at 2,077,873 to 2,078,454
dcd
Shewana3_1764: Shewana3_1764 - aminodeoxychorismate lyase apoprotein (RefSeq), at 2,078,460 to 2,079,269
_1764
Shewana3_1765: Shewana3_1765 - aminodeoxychorismate lyase (RefSeq), at 2,079,266 to 2,080,276
_1765
Shewana3_1766: tmk - thymidylate kinase (RefSeq), at 2,080,273 to 2,080,902
tmk
Shewana3_1767: Shewana3_1767 - DNA polymerase III, delta prime subunit (RefSeq), at 2,080,896 to 2,081,852
_1767
Position (kb)
2079
2080
2081 Strain fitness (log2 ratio)
-1
0
1 at 2078.499 kb on - strand at 2078.816 kb on + strand, within Shewana3_1764 at 2079.211 kb on + strand at 2079.374 kb on + strand, within Shewana3_1765 at 2079.380 kb on + strand, within Shewana3_1765 at 2079.398 kb on + strand, within Shewana3_1765 at 2079.482 kb on + strand, within Shewana3_1765 at 2079.520 kb on + strand, within Shewana3_1765 at 2079.626 kb on + strand, within Shewana3_1765 at 2079.769 kb on + strand, within Shewana3_1765 at 2080.078 kb on + strand, within Shewana3_1765
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 2,078,499 - -1.3 2,078,816 + Shewana3_1764 0.44 -1.0 2,079,211 + -1.0 2,079,374 + Shewana3_1765 0.11 -0.2 2,079,380 + Shewana3_1765 0.11 -1.0 2,079,398 + Shewana3_1765 0.13 +1.7 2,079,482 + Shewana3_1765 0.21 +0.1 2,079,520 + Shewana3_1765 0.25 +0.5 2,079,626 + Shewana3_1765 0.36 -0.2 2,079,769 + Shewana3_1765 0.50 +0.3 2,080,078 + Shewana3_1765 0.80 +0.7
Or see this region's nucleotide sequence