Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1190 and Shewana3_1191 are separated by 68 nucleotides Shewana3_1191 and Shewana3_1192 overlap by 1 nucleotides Shewana3_1192 and Shewana3_1193 are separated by 75 nucleotides Shewana3_1193 and Shewana3_1194 are separated by 221 nucleotides Shewana3_1194 and Shewana3_1195 are separated by 35 nucleotides
Shewana3_1190: Shewana3_1190 - hypothetical protein (RefSeq), at 1,398,768 to 1,399,202
_1190
Shewana3_1191: Shewana3_1191 - hypothetical protein (RefSeq), at 1,399,271 to 1,399,561
_1191
Shewana3_1192: Shewana3_1192 - protein of unknown function YGGT (RefSeq), at 1,399,561 to 1,400,109
_1192
Shewana3_1193: Shewana3_1193 - pyrroline-5-carboxylate reductase (RefSeq), at 1,400,185 to 1,401,003
_1193
Shewana3_1194: Shewana3_1194 - hypothetical protein (RefSeq), at 1,401,225 to 1,401,941
_1194
Shewana3_1195: Shewana3_1195 - pilus retraction ATPase PilT (RefSeq), at 1,401,977 to 1,403,014
_1195
Position (kb)
1400
1401
1402 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1399.358 kb on + strand, within Shewana3_1191 at 1399.559 kb on + strand at 1399.735 kb on + strand at 1399.969 kb on - strand, within Shewana3_1192 at 1400.026 kb on + strand, within Shewana3_1192 at 1400.034 kb on - strand, within Shewana3_1192 at 1400.340 kb on + strand, within Shewana3_1193 at 1400.553 kb on - strand, within Shewana3_1193 at 1400.639 kb on - strand, within Shewana3_1193 at 1400.661 kb on + strand, within Shewana3_1193 at 1400.699 kb on + strand at 1400.699 kb on + strand, within Shewana3_1193 at 1400.699 kb on + strand, within Shewana3_1193 at 1400.720 kb on + strand, within Shewana3_1193 at 1400.861 kb on - strand, within Shewana3_1193 at 1400.921 kb on + strand, within Shewana3_1193 at 1400.921 kb on + strand, within Shewana3_1193 at 1400.998 kb on + strand at 1401.022 kb on + strand at 1401.022 kb on + strand at 1401.030 kb on - strand at 1401.130 kb on + strand at 1401.250 kb on + strand at 1401.314 kb on - strand, within Shewana3_1194 at 1401.605 kb on - strand, within Shewana3_1194 at 1401.730 kb on + strand, within Shewana3_1194
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 1,399,358 + Shewana3_1191 0.30 -1.0 1,399,559 + -1.6 1,399,735 + -1.5 1,399,969 - Shewana3_1192 0.74 +0.6 1,400,026 + Shewana3_1192 0.85 +0.9 1,400,034 - Shewana3_1192 0.86 -0.8 1,400,340 + Shewana3_1193 0.19 -1.6 1,400,553 - Shewana3_1193 0.45 -4.4 1,400,639 - Shewana3_1193 0.55 -3.7 1,400,661 + Shewana3_1193 0.58 -2.4 1,400,699 + -1.3 1,400,699 + Shewana3_1193 0.63 -0.8 1,400,699 + Shewana3_1193 0.63 -2.8 1,400,720 + Shewana3_1193 0.65 -2.3 1,400,861 - Shewana3_1193 0.83 +0.5 1,400,921 + Shewana3_1193 0.90 -4.2 1,400,921 + Shewana3_1193 0.90 -0.8 1,400,998 + -2.7 1,401,022 + -2.6 1,401,022 + -4.1 1,401,030 - +0.8 1,401,130 + -2.0 1,401,250 + +0.5 1,401,314 - Shewana3_1194 0.12 -0.0 1,401,605 - Shewana3_1194 0.53 +0.4 1,401,730 + Shewana3_1194 0.70 -0.5
Or see this region's nucleotide sequence