Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trmB and Shewana3_1183 are separated by 45 nucleotides Shewana3_1183 and Shewana3_1184 overlap by 1 nucleotides Shewana3_1184 and Shewana3_1185 are separated by 178 nucleotides
Shewana3_1182: trmB - tRNA (guanine-N(7)-)-methyltransferase (RefSeq), at 1,389,839 to 1,390,555
trmB
Shewana3_1183: Shewana3_1183 - hypothetical protein (RefSeq), at 1,390,601 to 1,390,927
_1183
Shewana3_1184: Shewana3_1184 - Glutaminase (EC 3.5.1.2) (from data) , at 1,390,927 to 1,391,841
_1184
Shewana3_1185: Shewana3_1185 - hypothetical protein (RefSeq), at 1,392,020 to 1,392,841
_1185
Position (kb)
1390
1391
1392 Strain fitness (log2 ratio)
-2
-1
0
1 at 1389.960 kb on + strand, within trmB at 1390.008 kb on + strand, within trmB at 1391.340 kb on + strand, within Shewana3_1184 at 1391.348 kb on - strand, within Shewana3_1184 at 1391.401 kb on + strand, within Shewana3_1184 at 1391.409 kb on + strand, within Shewana3_1184 at 1391.482 kb on - strand, within Shewana3_1184 at 1391.547 kb on + strand, within Shewana3_1184 at 1391.598 kb on + strand, within Shewana3_1184 at 1391.731 kb on - strand, within Shewana3_1184 at 1391.744 kb on + strand, within Shewana3_1184 at 1391.752 kb on - strand at 1391.961 kb on - strand at 1392.009 kb on - strand at 1392.035 kb on + strand at 1392.197 kb on + strand, within Shewana3_1185 at 1392.238 kb on - strand, within Shewana3_1185 at 1392.352 kb on + strand, within Shewana3_1185 at 1392.464 kb on - strand, within Shewana3_1185 at 1392.626 kb on + strand, within Shewana3_1185
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 1,389,960 + trmB Shewana3_1182 0.17 +0.1 1,390,008 + trmB Shewana3_1182 0.24 -0.3 1,391,340 + Shewana3_1184 0.45 -0.0 1,391,348 - Shewana3_1184 0.46 -0.6 1,391,401 + Shewana3_1184 0.52 -0.4 1,391,409 + Shewana3_1184 0.53 +0.6 1,391,482 - Shewana3_1184 0.61 -1.4 1,391,547 + Shewana3_1184 0.68 -1.8 1,391,598 + Shewana3_1184 0.73 -0.2 1,391,731 - Shewana3_1184 0.88 -0.8 1,391,744 + Shewana3_1184 0.89 +0.2 1,391,752 - +0.2 1,391,961 - +0.2 1,392,009 - +0.2 1,392,035 + -0.1 1,392,197 + Shewana3_1185 0.22 +1.2 1,392,238 - Shewana3_1185 0.27 +0.7 1,392,352 + Shewana3_1185 0.40 +0.5 1,392,464 - Shewana3_1185 0.54 -0.5 1,392,626 + Shewana3_1185 0.74 +0.4
Or see this region's nucleotide sequence