Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0856

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0855 and Shewana3_0856 are separated by 74 nucleotidesShewana3_0856 and Shewana3_0857 overlap by 8 nucleotides Shewana3_0855: Shewana3_0855 - sulfite reductase (NADPH) alpha subunit (RefSeq), at 993,365 to 995,179 _0855 Shewana3_0856: Shewana3_0856 - sulfite reductase subunit beta (RefSeq), at 995,254 to 996,951 _0856 Shewana3_0857: Shewana3_0857 - phosphoadenosine phosphosulfate reductase (RefSeq), at 996,944 to 997,741 _0857 Position (kb) 995 996 997Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 994.255 kb on - strand, within Shewana3_0855at 994.255 kb on - strand, within Shewana3_0855at 994.255 kb on - strand, within Shewana3_0855at 994.347 kb on - strand, within Shewana3_0855at 994.347 kb on - strand, within Shewana3_0855at 994.355 kb on + strand, within Shewana3_0855at 994.391 kb on - strand, within Shewana3_0855at 994.474 kb on + strand, within Shewana3_0855at 994.474 kb on + strand, within Shewana3_0855at 994.482 kb on - strand, within Shewana3_0855at 994.533 kb on - strand, within Shewana3_0855at 994.564 kb on + strand, within Shewana3_0855at 994.695 kb on - strand, within Shewana3_0855at 994.870 kb on + strand, within Shewana3_0855at 994.969 kb on - strand, within Shewana3_0855at 994.985 kb on + strand, within Shewana3_0855at 994.986 kb on + strand, within Shewana3_0855at 995.055 kb on - strandat 995.087 kb on + strandat 995.148 kb on + strandat 995.286 kb on + strandat 995.462 kb on + strand, within Shewana3_0856at 995.496 kb on + strand, within Shewana3_0856at 995.504 kb on - strand, within Shewana3_0856at 995.504 kb on - strand, within Shewana3_0856at 995.583 kb on - strand, within Shewana3_0856at 995.722 kb on - strand, within Shewana3_0856at 995.788 kb on - strand, within Shewana3_0856at 995.825 kb on - strand, within Shewana3_0856at 996.024 kb on + strand, within Shewana3_0856at 996.146 kb on - strand, within Shewana3_0856at 996.189 kb on + strand, within Shewana3_0856at 996.210 kb on - strand, within Shewana3_0856at 996.237 kb on + strand, within Shewana3_0856at 996.287 kb on - strand, within Shewana3_0856at 996.287 kb on - strand, within Shewana3_0856at 996.340 kb on + strand, within Shewana3_0856at 996.500 kb on + strand, within Shewana3_0856at 996.500 kb on + strand, within Shewana3_0856at 996.513 kb on - strand, within Shewana3_0856at 996.538 kb on + strand, within Shewana3_0856at 996.651 kb on - strand, within Shewana3_0856at 996.745 kb on - strand, within Shewana3_0856at 997.303 kb on + strand, within Shewana3_0857at 997.303 kb on + strand, within Shewana3_0857at 997.571 kb on + strand, within Shewana3_0857

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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994,255 - Shewana3_0855 0.49 -2.8
994,255 - Shewana3_0855 0.49 -2.7
994,255 - Shewana3_0855 0.49 -0.9
994,347 - Shewana3_0855 0.54 -3.6
994,347 - Shewana3_0855 0.54 -4.1
994,355 + Shewana3_0855 0.55 -4.0
994,391 - Shewana3_0855 0.57 -4.2
994,474 + Shewana3_0855 0.61 -3.1
994,474 + Shewana3_0855 0.61 -5.0
994,482 - Shewana3_0855 0.62 -3.7
994,533 - Shewana3_0855 0.64 -2.1
994,564 + Shewana3_0855 0.66 -0.7
994,695 - Shewana3_0855 0.73 -3.8
994,870 + Shewana3_0855 0.83 -3.1
994,969 - Shewana3_0855 0.88 -3.1
994,985 + Shewana3_0855 0.89 -3.9
994,986 + Shewana3_0855 0.89 -4.5
995,055 - -3.3
995,087 + -0.5
995,148 + -3.8
995,286 + -4.7
995,462 + Shewana3_0856 0.12 -4.7
995,496 + Shewana3_0856 0.14 -3.6
995,504 - Shewana3_0856 0.15 -4.7
995,504 - Shewana3_0856 0.15 -3.9
995,583 - Shewana3_0856 0.19 -4.0
995,722 - Shewana3_0856 0.28 -2.8
995,788 - Shewana3_0856 0.31 -4.4
995,825 - Shewana3_0856 0.34 -2.4
996,024 + Shewana3_0856 0.45 -4.8
996,146 - Shewana3_0856 0.53 -4.4
996,189 + Shewana3_0856 0.55 -4.1
996,210 - Shewana3_0856 0.56 -3.7
996,237 + Shewana3_0856 0.58 -4.9
996,287 - Shewana3_0856 0.61 -0.8
996,287 - Shewana3_0856 0.61 -3.2
996,340 + Shewana3_0856 0.64 -4.4
996,500 + Shewana3_0856 0.73 -3.3
996,500 + Shewana3_0856 0.73 -3.7
996,513 - Shewana3_0856 0.74 -3.6
996,538 + Shewana3_0856 0.76 -3.1
996,651 - Shewana3_0856 0.82 -2.7
996,745 - Shewana3_0856 0.88 -4.0
997,303 + Shewana3_0857 0.45 -4.5
997,303 + Shewana3_0857 0.45 -6.2
997,571 + Shewana3_0857 0.79 -3.4

Or see this region's nucleotide sequence