Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0835 and Shewana3_0836 are separated by 75 nucleotides Shewana3_0836 and Shewana3_0837 are separated by 88 nucleotides
Shewana3_0835: Shewana3_0835 - LysR family transcriptional regulator (RefSeq), at 968,003 to 968,986
_0835
Shewana3_0836: Shewana3_0836 - lysine exporter protein LysE/YggA (RefSeq), at 969,062 to 969,685
_0836
Shewana3_0837: Shewana3_0837 - NAD-dependent epimerase/dehydratase (RefSeq), at 969,774 to 970,709
_0837
Position (kb) 969
970 Strain fitness (log2 ratio) -1
0
1 at 968.067 kb on + strand at 968.196 kb on - strand, within Shewana3_0835 at 968.237 kb on - strand, within Shewana3_0835 at 968.258 kb on + strand, within Shewana3_0835 at 968.313 kb on + strand, within Shewana3_0835 at 968.401 kb on + strand, within Shewana3_0835 at 968.409 kb on - strand, within Shewana3_0835 at 968.578 kb on - strand, within Shewana3_0835 at 968.744 kb on + strand, within Shewana3_0835 at 968.752 kb on - strand, within Shewana3_0835 at 968.867 kb on + strand, within Shewana3_0835 at 968.986 kb on + strand at 969.010 kb on + strand at 969.018 kb on - strand at 969.172 kb on - strand, within Shewana3_0836 at 969.188 kb on + strand, within Shewana3_0836 at 969.230 kb on - strand, within Shewana3_0836 at 969.266 kb on + strand, within Shewana3_0836 at 969.266 kb on + strand, within Shewana3_0836 at 969.279 kb on + strand, within Shewana3_0836 at 969.355 kb on + strand, within Shewana3_0836 at 969.441 kb on - strand, within Shewana3_0836 at 969.521 kb on + strand, within Shewana3_0836 at 969.943 kb on + strand, within Shewana3_0837 at 969.968 kb on + strand, within Shewana3_0837 at 970.026 kb on + strand, within Shewana3_0837 at 970.098 kb on - strand, within Shewana3_0837 at 970.231 kb on - strand, within Shewana3_0837 at 970.276 kb on + strand, within Shewana3_0837 at 970.386 kb on + strand, within Shewana3_0837 at 970.474 kb on + strand, within Shewana3_0837 at 970.535 kb on - strand, within Shewana3_0837 at 970.545 kb on + strand, within Shewana3_0837 at 970.622 kb on + strand at 970.659 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 968,067 + +0.5 968,196 - Shewana3_0835 0.20 +0.1 968,237 - Shewana3_0835 0.24 -0.4 968,258 + Shewana3_0835 0.26 +0.2 968,313 + Shewana3_0835 0.32 -0.1 968,401 + Shewana3_0835 0.40 -0.0 968,409 - Shewana3_0835 0.41 -0.0 968,578 - Shewana3_0835 0.58 +0.2 968,744 + Shewana3_0835 0.75 -0.6 968,752 - Shewana3_0835 0.76 +0.2 968,867 + Shewana3_0835 0.88 -0.7 968,986 + -0.0 969,010 + +0.1 969,018 - +0.2 969,172 - Shewana3_0836 0.18 -0.1 969,188 + Shewana3_0836 0.20 -0.4 969,230 - Shewana3_0836 0.27 -0.5 969,266 + Shewana3_0836 0.33 -0.9 969,266 + Shewana3_0836 0.33 -0.6 969,279 + Shewana3_0836 0.35 -0.9 969,355 + Shewana3_0836 0.47 -0.1 969,441 - Shewana3_0836 0.61 +0.5 969,521 + Shewana3_0836 0.74 +0.3 969,943 + Shewana3_0837 0.18 +0.9 969,968 + Shewana3_0837 0.21 -1.3 970,026 + Shewana3_0837 0.27 -0.7 970,098 - Shewana3_0837 0.35 +0.0 970,231 - Shewana3_0837 0.49 +0.3 970,276 + Shewana3_0837 0.54 +0.8 970,386 + Shewana3_0837 0.65 -0.1 970,474 + Shewana3_0837 0.75 +0.2 970,535 - Shewana3_0837 0.81 -0.8 970,545 + Shewana3_0837 0.82 +0.7 970,622 + +1.2 970,659 + +0.5
Or see this region's nucleotide sequence