Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0780 and Shewana3_0781 overlap by 1 nucleotides Shewana3_0781 and Shewana3_0782 are separated by 162 nucleotides Shewana3_0782 and Shewana3_0783 are separated by 97 nucleotides
Shewana3_0780: Shewana3_0780 - 2-dehydropantoate 2-reductase (RefSeq), at 902,585 to 903,568
_0780
Shewana3_0781: Shewana3_0781 - VanZ family protein (RefSeq), at 903,568 to 903,930
_0781
Shewana3_0782: Shewana3_0782 - putative nucleotide-binding protein (RefSeq), at 904,093 to 904,578
_0782
Shewana3_0783: Shewana3_0783 - major facilitator transporter (RefSeq), at 904,676 to 906,067
_0783
Position (kb) 903
904 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 902.712 kb on + strand, within Shewana3_0780 at 902.730 kb on - strand, within Shewana3_0780 at 902.788 kb on + strand, within Shewana3_0780 at 902.912 kb on - strand, within Shewana3_0780 at 902.970 kb on - strand, within Shewana3_0780 at 902.991 kb on + strand, within Shewana3_0780 at 902.993 kb on + strand, within Shewana3_0780 at 903.003 kb on + strand, within Shewana3_0780 at 903.003 kb on + strand, within Shewana3_0780 at 903.011 kb on - strand, within Shewana3_0780 at 903.011 kb on - strand, within Shewana3_0780 at 903.011 kb on - strand, within Shewana3_0780 at 903.079 kb on - strand, within Shewana3_0780 at 903.144 kb on - strand, within Shewana3_0780 at 903.184 kb on - strand, within Shewana3_0780 at 903.537 kb on - strand at 903.620 kb on - strand, within Shewana3_0781 at 903.687 kb on - strand, within Shewana3_0781 at 903.818 kb on - strand, within Shewana3_0781 at 904.074 kb on + strand at 904.486 kb on + strand, within Shewana3_0782 at 904.542 kb on + strand at 904.593 kb on - strand at 904.616 kb on + strand at 904.632 kb on + strand at 904.698 kb on + strand at 904.801 kb on - strand at 904.854 kb on - strand, within Shewana3_0783
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 902,712 + Shewana3_0780 0.13 -0.9 902,730 - Shewana3_0780 0.15 -0.1 902,788 + Shewana3_0780 0.21 +0.3 902,912 - Shewana3_0780 0.33 -3.1 902,970 - Shewana3_0780 0.39 -2.8 902,991 + Shewana3_0780 0.41 -0.7 902,993 + Shewana3_0780 0.41 -4.1 903,003 + Shewana3_0780 0.42 -3.3 903,003 + Shewana3_0780 0.42 -0.7 903,011 - Shewana3_0780 0.43 -3.5 903,011 - Shewana3_0780 0.43 -3.7 903,011 - Shewana3_0780 0.43 -2.4 903,079 - Shewana3_0780 0.50 -2.4 903,144 - Shewana3_0780 0.57 -3.0 903,184 - Shewana3_0780 0.61 -2.8 903,537 - -3.5 903,620 - Shewana3_0781 0.14 +0.3 903,687 - Shewana3_0781 0.33 +0.3 903,818 - Shewana3_0781 0.69 +0.9 904,074 + -0.3 904,486 + Shewana3_0782 0.81 -0.9 904,542 + +0.0 904,593 - -0.3 904,616 + +1.0 904,632 + +1.2 904,698 + +0.3 904,801 - +0.3 904,854 - Shewana3_0783 0.13 +0.9
Or see this region's nucleotide sequence