Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0694

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrplM and rpsI are separated by 14 nucleotidesrpsI and Shewana3_0694 are separated by 113 nucleotidesShewana3_0694 and Shewana3_0695 are separated by 66 nucleotides Shewana3_0692: rplM - 50S ribosomal protein L13 (RefSeq), at 809,168 to 809,596 rplM Shewana3_0693: rpsI - 30S ribosomal protein S9 (RefSeq), at 809,611 to 810,003 rpsI Shewana3_0694: Shewana3_0694 - hypothetical protein (RefSeq), at 810,117 to 810,305 _0694 Shewana3_0695: Shewana3_0695 - adenylosuccinate synthetase (RefSeq), at 810,372 to 811,667 _0695 Position (kb) 810 811Strain fitness (log2 ratio) -1 0 1at 810.099 kb on + strandat 810.121 kb on + strandat 810.248 kb on - strand, within Shewana3_0694at 810.279 kb on - strand, within Shewana3_0694at 810.390 kb on + strandat 810.689 kb on + strand, within Shewana3_0695at 810.706 kb on + strand, within Shewana3_0695at 810.716 kb on - strand, within Shewana3_0695at 810.788 kb on + strand, within Shewana3_0695at 810.827 kb on + strand, within Shewana3_0695at 811.278 kb on + strand, within Shewana3_0695

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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810,099 + -0.3
810,121 + +1.0
810,248 - Shewana3_0694 0.69 -1.0
810,279 - Shewana3_0694 0.86 -0.4
810,390 + +0.1
810,689 + Shewana3_0695 0.24 -1.1
810,706 + Shewana3_0695 0.26 +0.2
810,716 - Shewana3_0695 0.27 +0.5
810,788 + Shewana3_0695 0.32 -0.1
810,827 + Shewana3_0695 0.35 -0.3
811,278 + Shewana3_0695 0.70 +1.3

Or see this region's nucleotide sequence