Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0653
Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Sucrose 5 mM |
---|---|---|---|---|---|
remove | |||||
771,876 | + | Shewana3_0652 | 0.26 | -2.1 | |
771,949 | + | Shewana3_0652 | 0.32 | -3.3 | |
772,180 | + | Shewana3_0652 | 0.49 | -2.7 | |
772,400 | - | Shewana3_0652 | 0.65 | -2.1 | |
772,436 | + | Shewana3_0652 | 0.68 | -0.6 | |
772,670 | + | Shewana3_0652 | 0.85 | -3.5 | |
772,732 | + | Shewana3_0652 | 0.90 | -2.1 | |
772,749 | - | -3.1 | |||
772,865 | - | -0.4 | |||
772,925 | + | +0.1 | |||
772,982 | - | +0.7 | |||
773,112 | + | Shewana3_0653 | 0.21 | +0.9 | |
773,262 | - | Shewana3_0653 | 0.35 | +0.2 | |
773,354 | + | Shewana3_0653 | 0.43 | +0.4 | |
773,355 | - | Shewana3_0653 | 0.43 | +0.9 | |
773,429 | + | Shewana3_0653 | 0.50 | +0.9 | |
773,526 | - | Shewana3_0653 | 0.58 | -0.8 | |
773,595 | + | Shewana3_0653 | 0.65 | +0.7 | |
773,733 | + | Shewana3_0653 | 0.77 | -0.3 | |
773,784 | - | Shewana3_0653 | 0.82 | +0.3 | |
773,859 | - | Shewana3_0653 | 0.88 | -1.4 | |
773,948 | - | -0.7 | |||
773,950 | + | +0.4 | |||
774,743 | - | Shewana3_0654 | 0.71 | +0.3 | |
774,758 | + | Shewana3_0654 | 0.73 | +0.3 | |
774,854 | + | Shewana3_0654 | 0.83 | +0.4 | |
774,948 | - | +0.7 | |||
774,948 | - | +0.1 | |||
774,955 | - | -0.2 | |||
774,979 | + | -0.8 | |||
774,982 | - | +0.7 | |||
774,987 | - | -0.8 |
Or see this region's nucleotide sequence