Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0653

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0652 and Shewana3_0653 are separated by 1 nucleotidesShewana3_0653 and Shewana3_0654 are separated by 54 nucleotides Shewana3_0652: Shewana3_0652 - aspartate kinase III (RefSeq), at 771,517 to 772,872 _0652 Shewana3_0653: Shewana3_0653 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 772,874 to 773,989 _0653 Shewana3_0654: Shewana3_0654 - Mg2 transporter protein, CorA family protein (RefSeq), at 774,044 to 775,021 _0654 Position (kb) 772 773 774Strain fitness (log2 ratio) -3 -2 -1 0 1at 771.876 kb on + strand, within Shewana3_0652at 771.949 kb on + strand, within Shewana3_0652at 772.180 kb on + strand, within Shewana3_0652at 772.400 kb on - strand, within Shewana3_0652at 772.436 kb on + strand, within Shewana3_0652at 772.670 kb on + strand, within Shewana3_0652at 772.732 kb on + strand, within Shewana3_0652at 772.749 kb on - strandat 772.865 kb on - strandat 772.925 kb on + strandat 772.982 kb on - strandat 773.112 kb on + strand, within Shewana3_0653at 773.262 kb on - strand, within Shewana3_0653at 773.354 kb on + strand, within Shewana3_0653at 773.355 kb on - strand, within Shewana3_0653at 773.429 kb on + strand, within Shewana3_0653at 773.526 kb on - strand, within Shewana3_0653at 773.595 kb on + strand, within Shewana3_0653at 773.733 kb on + strand, within Shewana3_0653at 773.784 kb on - strand, within Shewana3_0653at 773.859 kb on - strand, within Shewana3_0653at 773.948 kb on - strandat 773.950 kb on + strandat 774.743 kb on - strand, within Shewana3_0654at 774.758 kb on + strand, within Shewana3_0654at 774.854 kb on + strand, within Shewana3_0654at 774.948 kb on - strandat 774.948 kb on - strandat 774.955 kb on - strandat 774.979 kb on + strandat 774.982 kb on - strandat 774.987 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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771,876 + Shewana3_0652 0.26 -2.1
771,949 + Shewana3_0652 0.32 -3.3
772,180 + Shewana3_0652 0.49 -2.7
772,400 - Shewana3_0652 0.65 -2.1
772,436 + Shewana3_0652 0.68 -0.6
772,670 + Shewana3_0652 0.85 -3.5
772,732 + Shewana3_0652 0.90 -2.1
772,749 - -3.1
772,865 - -0.4
772,925 + +0.1
772,982 - +0.7
773,112 + Shewana3_0653 0.21 +0.9
773,262 - Shewana3_0653 0.35 +0.2
773,354 + Shewana3_0653 0.43 +0.4
773,355 - Shewana3_0653 0.43 +0.9
773,429 + Shewana3_0653 0.50 +0.9
773,526 - Shewana3_0653 0.58 -0.8
773,595 + Shewana3_0653 0.65 +0.7
773,733 + Shewana3_0653 0.77 -0.3
773,784 - Shewana3_0653 0.82 +0.3
773,859 - Shewana3_0653 0.88 -1.4
773,948 - -0.7
773,950 + +0.4
774,743 - Shewana3_0654 0.71 +0.3
774,758 + Shewana3_0654 0.73 +0.3
774,854 + Shewana3_0654 0.83 +0.4
774,948 - +0.7
774,948 - +0.1
774,955 - -0.2
774,979 + -0.8
774,982 - +0.7
774,987 - -0.8

Or see this region's nucleotide sequence