Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0594

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0592 and Shewana3_0593 are separated by 79 nucleotidesShewana3_0593 and Shewana3_0594 are separated by 8 nucleotidesShewana3_0594 and mutL are separated by 13 nucleotides Shewana3_0592: Shewana3_0592 - carbohydrate kinase, YjeF related protein (RefSeq), at 694,463 to 695,962 _0592 Shewana3_0593: Shewana3_0593 - hypothetical protein (RefSeq), at 696,042 to 696,500 _0593 Shewana3_0594: Shewana3_0594 - cell wall hydrolase/autolysin (RefSeq), at 696,509 to 697,900 _0594 Shewana3_0595: mutL - DNA mismatch repair protein (RefSeq), at 697,914 to 699,860 mutL Position (kb) 696 697 698Strain fitness (log2 ratio) -1 0 1at 695.509 kb on + strand, within Shewana3_0592at 697.979 kb on + strandat 698.158 kb on + strand, within mutLat 698.158 kb on + strand, within mutLat 698.166 kb on - strand, within mutLat 698.448 kb on + strand, within mutLat 698.456 kb on - strand, within mutLat 698.652 kb on + strand, within mutLat 698.652 kb on + strand, within mutLat 698.655 kb on - strand, within mutLat 698.702 kb on - strand, within mutL

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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695,509 + Shewana3_0592 0.70 -1.0
697,979 + -0.3
698,158 + mutL Shewana3_0595 0.13 -0.3
698,158 + mutL Shewana3_0595 0.13 -1.5
698,166 - mutL Shewana3_0595 0.13 -0.4
698,448 + mutL Shewana3_0595 0.27 -0.2
698,456 - mutL Shewana3_0595 0.28 +0.6
698,652 + mutL Shewana3_0595 0.38 -0.7
698,652 + mutL Shewana3_0595 0.38 +0.1
698,655 - mutL Shewana3_0595 0.38 -0.4
698,702 - mutL Shewana3_0595 0.40 +0.1

Or see this region's nucleotide sequence