Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0505

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0504 and fre are separated by 267 nucleotidesfre and Shewana3_0506 are separated by 110 nucleotides Shewana3_0504: Shewana3_0504 - hypothetical protein (RefSeq), at 595,234 to 596,148 _0504 Shewana3_0505: fre - FMN reductase (RefSeq), at 596,416 to 597,114 fre Shewana3_0506: Shewana3_0506 - 3-octaprenyl-4hydroxybenzoate decarboxylase (RefSeq), at 597,225 to 598,706 _0506 Position (kb) 596 597 598Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 595.416 kb on - strand, within Shewana3_0504at 595.448 kb on + strand, within Shewana3_0504at 595.489 kb on + strand, within Shewana3_0504at 595.491 kb on + strand, within Shewana3_0504at 595.501 kb on + strand, within Shewana3_0504at 595.501 kb on + strand, within Shewana3_0504at 595.506 kb on + strand, within Shewana3_0504at 595.509 kb on - strand, within Shewana3_0504at 595.557 kb on + strand, within Shewana3_0504at 595.563 kb on + strand, within Shewana3_0504at 595.611 kb on - strand, within Shewana3_0504at 595.632 kb on + strand, within Shewana3_0504at 595.642 kb on - strand, within Shewana3_0504at 595.680 kb on + strand, within Shewana3_0504at 595.703 kb on + strand, within Shewana3_0504at 595.703 kb on + strand, within Shewana3_0504at 595.703 kb on + strand, within Shewana3_0504at 595.708 kb on + strand, within Shewana3_0504at 595.711 kb on - strand, within Shewana3_0504at 595.716 kb on - strand, within Shewana3_0504at 595.719 kb on + strand, within Shewana3_0504at 595.733 kb on - strand, within Shewana3_0504at 595.762 kb on + strand, within Shewana3_0504at 595.770 kb on - strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.851 kb on + strand, within Shewana3_0504at 595.853 kb on + strand, within Shewana3_0504at 595.859 kb on - strand, within Shewana3_0504at 595.859 kb on - strand, within Shewana3_0504at 595.859 kb on - strand, within Shewana3_0504at 595.859 kb on - strand, within Shewana3_0504at 595.859 kb on - strand, within Shewana3_0504at 595.859 kb on - strand, within Shewana3_0504at 595.859 kb on - strand, within Shewana3_0504at 595.859 kb on - strand, within Shewana3_0504at 595.859 kb on - strand, within Shewana3_0504at 595.859 kb on - strand, within Shewana3_0504at 595.859 kb on - strand, within Shewana3_0504at 595.861 kb on - strand, within Shewana3_0504at 595.960 kb on - strand, within Shewana3_0504at 595.980 kb on + strand, within Shewana3_0504at 595.982 kb on - strand, within Shewana3_0504at 596.004 kb on + strand, within Shewana3_0504at 596.024 kb on + strand, within Shewana3_0504at 596.024 kb on + strand, within Shewana3_0504at 596.051 kb on + strand, within Shewana3_0504at 596.072 kb on + strandat 596.077 kb on + strandat 596.085 kb on - strandat 596.098 kb on + strandat 596.125 kb on + strandat 596.150 kb on - strandat 596.150 kb on - strandat 596.152 kb on + strandat 596.190 kb on - strandat 596.207 kb on + strandat 596.218 kb on + strandat 596.218 kb on + strandat 596.223 kb on + strandat 596.223 kb on + strandat 596.226 kb on - strandat 596.233 kb on + strandat 596.365 kb on - strandat 596.492 kb on + strand, within freat 596.710 kb on - strand, within freat 596.759 kb on + strand, within freat 596.794 kb on + strand, within freat 596.794 kb on + strand, within freat 596.829 kb on - strand, within freat 597.160 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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595,416 - Shewana3_0504 0.20 -0.7
595,448 + Shewana3_0504 0.23 +0.5
595,489 + Shewana3_0504 0.28 -0.4
595,491 + Shewana3_0504 0.28 +0.7
595,501 + Shewana3_0504 0.29 -0.2
595,501 + Shewana3_0504 0.29 +0.3
595,506 + Shewana3_0504 0.30 +0.2
595,509 - Shewana3_0504 0.30 +1.0
595,557 + Shewana3_0504 0.35 +1.2
595,563 + Shewana3_0504 0.36 -0.9
595,611 - Shewana3_0504 0.41 +1.4
595,632 + Shewana3_0504 0.43 +1.0
595,642 - Shewana3_0504 0.45 +0.6
595,680 + Shewana3_0504 0.49 +0.2
595,703 + Shewana3_0504 0.51 +0.9
595,703 + Shewana3_0504 0.51 -0.3
595,703 + Shewana3_0504 0.51 +0.8
595,708 + Shewana3_0504 0.52 -0.4
595,711 - Shewana3_0504 0.52 -0.0
595,716 - Shewana3_0504 0.53 -0.1
595,719 + Shewana3_0504 0.53 -0.2
595,733 - Shewana3_0504 0.55 +0.8
595,762 + Shewana3_0504 0.58 +0.4
595,770 - Shewana3_0504 0.59 +1.8
595,851 + Shewana3_0504 0.67 +0.9
595,851 + Shewana3_0504 0.67 -0.0
595,851 + Shewana3_0504 0.67 -0.3
595,851 + Shewana3_0504 0.67 +0.0
595,851 + Shewana3_0504 0.67 +1.0
595,851 + Shewana3_0504 0.67 +0.2
595,851 + Shewana3_0504 0.67 +0.4
595,851 + Shewana3_0504 0.67 +0.3
595,851 + Shewana3_0504 0.67 -0.3
595,851 + Shewana3_0504 0.67 +0.3
595,851 + Shewana3_0504 0.67 -1.0
595,851 + Shewana3_0504 0.67 -0.0
595,851 + Shewana3_0504 0.67 +0.4
595,851 + Shewana3_0504 0.67 +0.3
595,851 + Shewana3_0504 0.67 +0.5
595,851 + Shewana3_0504 0.67 -0.5
595,851 + Shewana3_0504 0.67 +0.6
595,851 + Shewana3_0504 0.67 +0.1
595,851 + Shewana3_0504 0.67 -1.0
595,853 + Shewana3_0504 0.68 +1.0
595,859 - Shewana3_0504 0.68 -0.8
595,859 - Shewana3_0504 0.68 +0.3
595,859 - Shewana3_0504 0.68 +0.5
595,859 - Shewana3_0504 0.68 -0.9
595,859 - Shewana3_0504 0.68 +1.0
595,859 - Shewana3_0504 0.68 +0.3
595,859 - Shewana3_0504 0.68 +1.2
595,859 - Shewana3_0504 0.68 +0.1
595,859 - Shewana3_0504 0.68 -2.3
595,859 - Shewana3_0504 0.68 +0.2
595,859 - Shewana3_0504 0.68 -0.3
595,861 - Shewana3_0504 0.69 +0.4
595,960 - Shewana3_0504 0.79 -0.2
595,980 + Shewana3_0504 0.82 +0.3
595,982 - Shewana3_0504 0.82 -0.2
596,004 + Shewana3_0504 0.84 +0.4
596,024 + Shewana3_0504 0.86 +0.3
596,024 + Shewana3_0504 0.86 +0.3
596,051 + Shewana3_0504 0.89 +0.5
596,072 + -0.2
596,077 + +0.7
596,085 - -0.4
596,098 + +0.6
596,125 + +0.7
596,150 - -0.2
596,150 - +1.0
596,152 + +0.0
596,190 - +0.6
596,207 + -0.3
596,218 + -0.0
596,218 + +0.4
596,223 + -0.7
596,223 + -0.8
596,226 - -0.5
596,233 + +1.1
596,365 - +1.2
596,492 + fre Shewana3_0505 0.11 -1.6
596,710 - fre Shewana3_0505 0.42 +0.8
596,759 + fre Shewana3_0505 0.49 -0.4
596,794 + fre Shewana3_0505 0.54 -3.6
596,794 + fre Shewana3_0505 0.54 -0.8
596,829 - fre Shewana3_0505 0.59 -2.6
597,160 + +0.4

Or see this region's nucleotide sequence