Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0359 and Shewana3_0360 are separated by 142 nucleotides Shewana3_0360 and Shewana3_0361 are separated by 1 nucleotides Shewana3_0361 and Shewana3_0362 are separated by 344 nucleotides
Shewana3_0359: Shewana3_0359 - threonine dehydratase (RefSeq), at 396,057 to 397,700
_0359
Shewana3_0360: Shewana3_0360 - alanine-glyoxylate aminotransferase (RefSeq), at 397,843 to 398,976
_0360
Shewana3_0361: Shewana3_0361 - hypothetical protein (RefSeq), at 398,978 to 399,271
_0361
Shewana3_0362: Shewana3_0362 - hypothetical protein (RefSeq), at 399,616 to 399,855
_0362
Position (kb) 397
398
399 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 396.864 kb on - strand, within Shewana3_0359 at 397.490 kb on - strand, within Shewana3_0359 at 397.503 kb on - strand, within Shewana3_0359 at 397.544 kb on - strand at 397.610 kb on + strand at 397.610 kb on + strand at 397.734 kb on - strand at 397.752 kb on - strand at 397.778 kb on + strand at 397.828 kb on + strand at 398.284 kb on - strand, within Shewana3_0360 at 398.294 kb on + strand, within Shewana3_0360 at 398.380 kb on + strand, within Shewana3_0360 at 398.390 kb on - strand, within Shewana3_0360 at 398.567 kb on - strand, within Shewana3_0360 at 398.705 kb on + strand, within Shewana3_0360 at 398.842 kb on + strand, within Shewana3_0360 at 398.954 kb on + strand at 398.968 kb on - strand at 399.166 kb on - strand, within Shewana3_0361 at 399.295 kb on + strand at 399.850 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 396,864 - Shewana3_0359 0.49 -5.2 397,490 - Shewana3_0359 0.87 -3.0 397,503 - Shewana3_0359 0.88 -3.5 397,544 - -3.5 397,610 + -3.2 397,610 + -3.4 397,734 - +0.1 397,752 - +0.8 397,778 + -0.6 397,828 + -0.1 398,284 - Shewana3_0360 0.39 +0.9 398,294 + Shewana3_0360 0.40 +0.5 398,380 + Shewana3_0360 0.47 +0.5 398,390 - Shewana3_0360 0.48 +1.1 398,567 - Shewana3_0360 0.64 +0.2 398,705 + Shewana3_0360 0.76 +0.1 398,842 + Shewana3_0360 0.88 +0.8 398,954 + -0.6 398,968 - +1.8 399,166 - Shewana3_0361 0.64 +0.1 399,295 + -0.3 399,850 + +0.5
Or see this region's nucleotide sequence