Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0358 and Shewana3_0359 are separated by 1 nucleotides Shewana3_0359 and Shewana3_0360 are separated by 142 nucleotides
Shewana3_0358: Shewana3_0358 - dihydroxy-acid dehydratase (RefSeq), at 394,196 to 396,055
_0358
Shewana3_0359: Shewana3_0359 - threonine dehydratase (RefSeq), at 396,057 to 397,700
_0359
Shewana3_0360: Shewana3_0360 - alanine-glyoxylate aminotransferase (RefSeq), at 397,843 to 398,976
_0360
Position (kb) 396
397
398 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 395.094 kb on + strand, within Shewana3_0358 at 395.128 kb on + strand, within Shewana3_0358 at 395.136 kb on - strand, within Shewana3_0358 at 395.168 kb on + strand, within Shewana3_0358 at 395.215 kb on - strand, within Shewana3_0358 at 395.272 kb on + strand, within Shewana3_0358 at 395.293 kb on + strand, within Shewana3_0358 at 395.301 kb on - strand, within Shewana3_0358 at 395.378 kb on + strand, within Shewana3_0358 at 395.417 kb on + strand, within Shewana3_0358 at 395.424 kb on + strand, within Shewana3_0358 at 395.573 kb on + strand, within Shewana3_0358 at 395.725 kb on - strand, within Shewana3_0358 at 395.730 kb on - strand, within Shewana3_0358 at 395.827 kb on - strand, within Shewana3_0358 at 395.868 kb on + strand, within Shewana3_0358 at 395.874 kb on + strand at 395.882 kb on - strand at 395.900 kb on + strand at 396.089 kb on + strand at 396.089 kb on + strand at 396.097 kb on - strand at 396.186 kb on + strand at 396.293 kb on - strand, within Shewana3_0359 at 396.420 kb on - strand, within Shewana3_0359 at 396.429 kb on - strand, within Shewana3_0359 at 396.522 kb on - strand, within Shewana3_0359 at 396.649 kb on + strand, within Shewana3_0359 at 396.649 kb on + strand, within Shewana3_0359 at 396.864 kb on - strand, within Shewana3_0359 at 397.490 kb on - strand, within Shewana3_0359 at 397.503 kb on - strand, within Shewana3_0359 at 397.544 kb on - strand at 397.610 kb on + strand at 397.610 kb on + strand at 397.734 kb on - strand at 397.752 kb on - strand at 397.778 kb on + strand at 397.828 kb on + strand at 398.284 kb on - strand, within Shewana3_0360 at 398.294 kb on + strand, within Shewana3_0360 at 398.380 kb on + strand, within Shewana3_0360 at 398.390 kb on - strand, within Shewana3_0360 at 398.567 kb on - strand, within Shewana3_0360
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 395,094 + Shewana3_0358 0.48 -3.2 395,128 + Shewana3_0358 0.50 -4.1 395,136 - Shewana3_0358 0.51 -4.6 395,168 + Shewana3_0358 0.52 -2.8 395,215 - Shewana3_0358 0.55 -2.3 395,272 + Shewana3_0358 0.58 -4.0 395,293 + Shewana3_0358 0.59 -4.1 395,301 - Shewana3_0358 0.59 -5.6 395,378 + Shewana3_0358 0.64 -5.0 395,417 + Shewana3_0358 0.66 -3.5 395,424 + Shewana3_0358 0.66 -3.2 395,573 + Shewana3_0358 0.74 -4.3 395,725 - Shewana3_0358 0.82 -1.0 395,730 - Shewana3_0358 0.82 -5.4 395,827 - Shewana3_0358 0.88 -3.3 395,868 + Shewana3_0358 0.90 -4.3 395,874 + -1.3 395,882 - -3.7 395,900 + -4.3 396,089 + -3.7 396,089 + -4.1 396,097 - -3.2 396,186 + -3.2 396,293 - Shewana3_0359 0.14 -3.9 396,420 - Shewana3_0359 0.22 -4.3 396,429 - Shewana3_0359 0.23 -1.9 396,522 - Shewana3_0359 0.28 -1.0 396,649 + Shewana3_0359 0.36 -4.5 396,649 + Shewana3_0359 0.36 -4.9 396,864 - Shewana3_0359 0.49 -5.2 397,490 - Shewana3_0359 0.87 -3.0 397,503 - Shewana3_0359 0.88 -3.5 397,544 - -3.5 397,610 + -3.2 397,610 + -3.4 397,734 - +0.1 397,752 - +0.8 397,778 + -0.6 397,828 + -0.1 398,284 - Shewana3_0360 0.39 +0.9 398,294 + Shewana3_0360 0.40 +0.5 398,380 + Shewana3_0360 0.47 +0.5 398,390 - Shewana3_0360 0.48 +1.1 398,567 - Shewana3_0360 0.64 +0.2
Or see this region's nucleotide sequence