Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0265 and Shewana3_0266 are separated by 299 nucleotides Shewana3_0266 and Shewana3_0267 are separated by 149 nucleotides
Shewana3_0265: Shewana3_0265 - hypothetical protein (RefSeq), at 297,172 to 299,271
_0265
Shewana3_0266: Shewana3_0266 - 2OG-Fe(II) oxygenase (RefSeq), at 299,571 to 300,554
_0266
Shewana3_0267: Shewana3_0267 - hypothetical protein (RefSeq), at 300,704 to 301,093
_0267
Position (kb)
299
300
301 Strain fitness (log2 ratio)
-1
0
1 at 298.584 kb on - strand, within Shewana3_0265 at 298.801 kb on - strand, within Shewana3_0265 at 298.933 kb on - strand, within Shewana3_0265 at 298.967 kb on - strand, within Shewana3_0265 at 299.008 kb on + strand, within Shewana3_0265 at 299.126 kb on + strand at 299.134 kb on - strand at 299.188 kb on + strand at 299.191 kb on - strand at 299.221 kb on + strand at 299.296 kb on - strand at 299.530 kb on - strand at 299.856 kb on - strand, within Shewana3_0266 at 299.883 kb on - strand, within Shewana3_0266 at 300.040 kb on + strand, within Shewana3_0266 at 300.040 kb on + strand, within Shewana3_0266 at 300.057 kb on + strand, within Shewana3_0266 at 300.081 kb on + strand, within Shewana3_0266 at 300.135 kb on + strand, within Shewana3_0266 at 300.148 kb on - strand, within Shewana3_0266 at 300.223 kb on - strand, within Shewana3_0266 at 300.439 kb on + strand, within Shewana3_0266 at 300.508 kb on + strand at 300.646 kb on + strand at 300.646 kb on + strand at 300.646 kb on + strand at 300.654 kb on - strand at 300.654 kb on - strand at 300.654 kb on - strand at 300.743 kb on - strand, within Shewana3_0267 at 300.743 kb on - strand, within Shewana3_0267 at 300.764 kb on + strand, within Shewana3_0267 at 300.881 kb on + strand, within Shewana3_0267 at 300.881 kb on + strand, within Shewana3_0267 at 300.975 kb on + strand, within Shewana3_0267 at 301.004 kb on - strand, within Shewana3_0267 at 301.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 298,584 - Shewana3_0265 0.67 +0.6 298,801 - Shewana3_0265 0.78 -0.2 298,933 - Shewana3_0265 0.84 -0.7 298,967 - Shewana3_0265 0.85 +0.2 299,008 + Shewana3_0265 0.87 -0.1 299,126 + -0.2 299,134 - -0.8 299,188 + -1.0 299,191 - -1.1 299,221 + +0.0 299,296 - +0.4 299,530 - +1.0 299,856 - Shewana3_0266 0.29 -0.4 299,883 - Shewana3_0266 0.32 -0.6 300,040 + Shewana3_0266 0.48 +0.9 300,040 + Shewana3_0266 0.48 -0.1 300,057 + Shewana3_0266 0.49 +0.2 300,081 + Shewana3_0266 0.52 +0.3 300,135 + Shewana3_0266 0.57 -0.1 300,148 - Shewana3_0266 0.59 +0.9 300,223 - Shewana3_0266 0.66 -0.4 300,439 + Shewana3_0266 0.88 -0.2 300,508 + -0.6 300,646 + -0.1 300,646 + +0.8 300,646 + +0.5 300,654 - +0.5 300,654 - -0.2 300,654 - +1.3 300,743 - Shewana3_0267 0.10 +0.3 300,743 - Shewana3_0267 0.10 +1.1 300,764 + Shewana3_0267 0.15 -0.3 300,881 + Shewana3_0267 0.45 +0.4 300,881 + Shewana3_0267 0.45 -0.2 300,975 + Shewana3_0267 0.69 +0.7 301,004 - Shewana3_0267 0.77 +1.6 301,075 - +0.3
Or see this region's nucleotide sequence