Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0262 and Shewana3_0263 are separated by 116 nucleotides Shewana3_0263 and Shewana3_0264 are separated by 311 nucleotides Shewana3_0264 and Shewana3_0265 are separated by 113 nucleotides
Shewana3_0262: Shewana3_0262 - TetR family transcriptional regulator (RefSeq), at 293,767 to 294,363
_0262
Shewana3_0263: Shewana3_0263 - hypothetical protein (RefSeq), at 294,480 to 294,791
_0263
Shewana3_0264: Shewana3_0264 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 295,103 to 297,058
_0264
Shewana3_0265: Shewana3_0265 - hypothetical protein (RefSeq), at 297,172 to 299,271
_0265
Position (kb) 295
296
297
298 Strain fitness (log2 ratio) -1
0
1
2 at 294.130 kb on - strand, within Shewana3_0262 at 294.169 kb on - strand, within Shewana3_0262 at 294.169 kb on - strand, within Shewana3_0262 at 294.191 kb on - strand, within Shewana3_0262 at 294.279 kb on - strand, within Shewana3_0262 at 294.642 kb on - strand, within Shewana3_0263 at 294.648 kb on - strand, within Shewana3_0263 at 294.718 kb on - strand, within Shewana3_0263 at 295.258 kb on + strand at 295.258 kb on + strand at 295.298 kb on - strand at 295.331 kb on + strand, within Shewana3_0264 at 295.458 kb on + strand, within Shewana3_0264 at 295.458 kb on + strand, within Shewana3_0264 at 295.463 kb on + strand, within Shewana3_0264 at 295.471 kb on + strand, within Shewana3_0264 at 295.498 kb on + strand, within Shewana3_0264 at 295.526 kb on + strand, within Shewana3_0264 at 295.614 kb on + strand, within Shewana3_0264 at 295.622 kb on - strand, within Shewana3_0264 at 295.645 kb on + strand, within Shewana3_0264 at 295.749 kb on + strand, within Shewana3_0264 at 296.115 kb on + strand, within Shewana3_0264 at 296.115 kb on + strand, within Shewana3_0264 at 296.115 kb on + strand, within Shewana3_0264 at 296.248 kb on + strand, within Shewana3_0264 at 296.364 kb on - strand, within Shewana3_0264 at 296.367 kb on + strand, within Shewana3_0264 at 296.418 kb on + strand, within Shewana3_0264 at 296.688 kb on + strand, within Shewana3_0264 at 296.730 kb on + strand, within Shewana3_0264 at 296.769 kb on - strand, within Shewana3_0264 at 296.788 kb on + strand, within Shewana3_0264 at 296.788 kb on + strand, within Shewana3_0264 at 296.857 kb on + strand, within Shewana3_0264 at 296.858 kb on + strand, within Shewana3_0264 at 296.924 kb on + strand at 296.924 kb on + strand at 297.013 kb on - strand at 297.052 kb on + strand at 297.369 kb on - strand at 297.380 kb on + strand at 297.380 kb on + strand at 297.388 kb on - strand, within Shewana3_0265 at 297.388 kb on - strand, within Shewana3_0265 at 297.453 kb on - strand, within Shewana3_0265 at 297.482 kb on + strand, within Shewana3_0265 at 297.482 kb on - strand, within Shewana3_0265 at 297.511 kb on - strand, within Shewana3_0265 at 297.628 kb on + strand, within Shewana3_0265 at 297.637 kb on - strand, within Shewana3_0265 at 297.659 kb on + strand, within Shewana3_0265 at 297.723 kb on - strand, within Shewana3_0265 at 297.726 kb on + strand, within Shewana3_0265 at 297.774 kb on - strand, within Shewana3_0265 at 297.847 kb on - strand, within Shewana3_0265 at 297.901 kb on - strand, within Shewana3_0265 at 297.903 kb on + strand, within Shewana3_0265 at 297.911 kb on - strand, within Shewana3_0265 at 297.921 kb on + strand, within Shewana3_0265 at 298.045 kb on - strand, within Shewana3_0265
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 294,130 - Shewana3_0262 0.61 +1.2 294,169 - Shewana3_0262 0.67 +0.7 294,169 - Shewana3_0262 0.67 -0.3 294,191 - Shewana3_0262 0.71 +0.1 294,279 - Shewana3_0262 0.86 +0.2 294,642 - Shewana3_0263 0.52 -0.4 294,648 - Shewana3_0263 0.54 +0.5 294,718 - Shewana3_0263 0.76 -0.7 295,258 + +0.8 295,258 + +0.6 295,298 - -0.4 295,331 + Shewana3_0264 0.12 +0.4 295,458 + Shewana3_0264 0.18 -0.1 295,458 + Shewana3_0264 0.18 +0.0 295,463 + Shewana3_0264 0.18 -1.2 295,471 + Shewana3_0264 0.19 +0.3 295,498 + Shewana3_0264 0.20 -0.8 295,526 + Shewana3_0264 0.22 -0.6 295,614 + Shewana3_0264 0.26 +0.7 295,622 - Shewana3_0264 0.27 -1.1 295,645 + Shewana3_0264 0.28 -0.6 295,749 + Shewana3_0264 0.33 -1.7 296,115 + Shewana3_0264 0.52 -0.8 296,115 + Shewana3_0264 0.52 -0.2 296,115 + Shewana3_0264 0.52 +1.0 296,248 + Shewana3_0264 0.59 -0.8 296,364 - Shewana3_0264 0.64 +0.2 296,367 + Shewana3_0264 0.65 +0.1 296,418 + Shewana3_0264 0.67 +0.5 296,688 + Shewana3_0264 0.81 -1.4 296,730 + Shewana3_0264 0.83 -0.6 296,769 - Shewana3_0264 0.85 +0.3 296,788 + Shewana3_0264 0.86 +0.2 296,788 + Shewana3_0264 0.86 +0.4 296,857 + Shewana3_0264 0.90 -0.5 296,858 + Shewana3_0264 0.90 +1.1 296,924 + -0.7 296,924 + +0.5 297,013 - -0.1 297,052 + -0.2 297,369 - -1.2 297,380 + -0.3 297,380 + -0.7 297,388 - Shewana3_0265 0.10 -0.6 297,388 - Shewana3_0265 0.10 -0.9 297,453 - Shewana3_0265 0.13 -0.4 297,482 + Shewana3_0265 0.15 +0.1 297,482 - Shewana3_0265 0.15 -0.2 297,511 - Shewana3_0265 0.16 -0.1 297,628 + Shewana3_0265 0.22 -0.1 297,637 - Shewana3_0265 0.22 +0.6 297,659 + Shewana3_0265 0.23 -0.1 297,723 - Shewana3_0265 0.26 -0.5 297,726 + Shewana3_0265 0.26 +1.3 297,774 - Shewana3_0265 0.29 +0.2 297,847 - Shewana3_0265 0.32 +0.4 297,901 - Shewana3_0265 0.35 +2.2 297,903 + Shewana3_0265 0.35 +0.7 297,911 - Shewana3_0265 0.35 -0.7 297,921 + Shewana3_0265 0.36 -0.6 298,045 - Shewana3_0265 0.42 +0.6
Or see this region's nucleotide sequence